Jatropha Genome Database
- JcCB0891141.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0891141.10 - phase: 1 /partial
(83 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G04240.1 | Symbols: SHY2, IAA3 | SHY2 (SHORT HYPOCOTYL 2); tr... 125 4e-30
AT5G43700.1 | Symbols: ATAUX2-11, IAA4 | ATAUX2-11 (AUXIN INDUCI... 124 1e-29
AT3G23030.1 | Symbols: IAA2 | IAA2 (INDOLE-3-ACETIC ACID INDUCIB... 100 1e-22
AT1G04250.1 | Symbols: AXR3, IAA17 | AXR3 (AUXIN RESISTANT 3); t... 96 4e-21
AT4G29080.1 | Symbols: PAP2, IAA27 | PAP2 (PHYTOCHROME-ASSOCIATE... 92 7e-20
AT4G14550.1 | Symbols: IAA14, SLR | IAA14 (INDOLE-3-ACETIC ACID ... 91 2e-19
AT4G14560.1 | Symbols: IAA1, AXR5 | IAA1 (INDOLE-3-ACETIC ACID I... 89 5e-19
AT3G04730.1 | Symbols: IAA16 | IAA16; transcription factor | chr... 88 1e-18
AT5G65670.1 | Symbols: IAA9 | IAA9 (INDOLE-3-ACETIC ACID INDUCIB... 87 2e-18
AT5G65670.2 | Symbols: IAA9 | IAA9 (INDOLE-3-ACETIC ACID INDUCIB... 87 2e-18
AT2G22670.2 | Symbols: IAA8 | IAA8; transcription factor | chr2:... 87 3e-18
AT2G22670.3 | Symbols: IAA8 | IAA8; transcription factor | chr2:... 87 3e-18
AT2G22670.1 | Symbols: IAA8 | IAA8; transcription factor | chr2:... 87 3e-18
AT3G23050.2 | Symbols: IAA7, AXR2 | IAA7 (INDOLE-3-ACETIC ACID 7... 86 5e-18
AT3G23050.1 | Symbols: IAA7, AXR2 | IAA7 (INDOLE-3-ACETIC ACID 7... 86 6e-18
AT3G15540.1 | Symbols: IAA19, MSG2 | IAA19 (INDOLE-3-ACETIC ACID... 71 1e-13
AT1G52830.1 | Symbols: IAA6, SHY1 | IAA6 (INDOLE-3-ACETIC ACID 6... 69 6e-13
AT1G15580.1 | Symbols: IAA5, ATAUX2-27, AUX2-27 | IAA5 (INDOLE-3... 69 6e-13
AT4G28640.1 | Symbols: IAA11 | IAA11 (INDOLE-3-ACETIC ACID INDUC... 61 1e-10
AT1G80390.1 | Symbols: IAA15 | IAA15 (INDOLE-3-ACETIC ACID INDUC... 60 2e-10
AT4G28640.2 | Symbols: IAA11 | IAA11 (INDOLE-3-ACETIC ACID INDUC... 59 5e-10
AT2G33310.3 | Symbols: IAA13 | IAA13; transcription factor | chr... 59 6e-10
AT2G33310.1 | Symbols: IAA13 | IAA13; transcription factor | chr... 59 6e-10
AT3G16500.1 | Symbols: PAP1, IAA26 | PAP1 (PHYTOCHROME-ASSOCIATE... 57 2e-09
AT1G04550.1 | Symbols: IAA12, BDL | IAA12 (AUXIN-INDUCED PROTEIN... 56 4e-09
AT2G33310.2 | Symbols: IAA13 | IAA13; transcription factor | chr... 55 6e-09
AT5G25890.1 | Symbols: IAA28, IAR2 | IAA28 (INDOLE-3-ACETIC ACID... 55 1e-08
AT1G04550.2 | Symbols: IAA12, BDL | IAA12 (AUXIN-INDUCED PROTEIN... 54 2e-08
AT3G17600.1 | Symbols: IAA31 | IAA31 (INDOLE-3-ACETIC ACID INDUC... 50 2e-07
>AT1G04240.1 | Symbols: SHY2, IAA3 | SHY2 (SHORT HYPOCOTYL 2);
transcription factor | chr1:1128564-1129319 REVERSE
Length = 189
Score = 125 bits (315), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 61/80 (76%), Positives = 68/80 (85%), Gaps = 2/80 (2%)
Query: 3 ETAPPAKAQVVGWPPIRSYRKNCFQAKKMEAE--GSGIYVKVSMDGAPYLRKIDLKLYKD 60
ET+PP KAQ+VGWPP+RSYRKN Q+KK E+E G GIYVKVSMDGAPYLRKIDL YK
Sbjct: 56 ETSPPRKAQIVGWPPVRSYRKNNIQSKKNESEHEGQGIYVKVSMDGAPYLRKIDLSCYKG 115
Query: 61 YSELLKALEDMFKFEVGKYY 80
YSELLKALE MFKF VG+Y+
Sbjct: 116 YSELLKALEVMFKFSVGEYF 135
>AT5G43700.1 | Symbols: ATAUX2-11, IAA4 | ATAUX2-11 (AUXIN INDUCIBLE
2-11); DNA binding / transcription factor |
chr5:17550465-17551206 FORWARD
Length = 186
Score = 124 bits (312), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 57/78 (73%), Positives = 66/78 (84%)
Query: 3 ETAPPAKAQVVGWPPIRSYRKNCFQAKKMEAEGSGIYVKVSMDGAPYLRKIDLKLYKDYS 62
ETA P KAQ+VGWPP+RSYRKN Q KK E+EG G YVKVSMDGAPYLRKIDL +YK Y
Sbjct: 54 ETASPPKAQIVGWPPVRSYRKNNVQTKKSESEGQGNYVKVSMDGAPYLRKIDLTMYKQYP 113
Query: 63 ELLKALEDMFKFEVGKYY 80
EL+K+LE+MFKF VG+Y+
Sbjct: 114 ELMKSLENMFKFSVGEYF 131
>AT3G23030.1 | Symbols: IAA2 | IAA2 (INDOLE-3-ACETIC ACID INDUCIBLE
2); transcription factor | chr3:8181069-8181685 REVERSE
Length = 174
Score = 100 bits (250), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/79 (62%), Positives = 58/79 (73%), Gaps = 9/79 (11%)
Query: 1 DQETAPPAKAQVVGWPPIRSYRKNCFQAKKMEAEGSGIYVKVSMDGAPYLRKIDLKLYKD 60
++E+ PP K Q+VGWPP+RS RKN S YVKVSMDGAPYLRKIDLK YK+
Sbjct: 50 EEESTPPTKTQIVGWPPVRSSRKN---------NNSVSYVKVSMDGAPYLRKIDLKTYKN 100
Query: 61 YSELLKALEDMFKFEVGKY 79
Y ELLKALE+MFK +G+Y
Sbjct: 101 YPELLKALENMFKVMIGEY 119
>AT1G04250.1 | Symbols: AXR3, IAA17 | AXR3 (AUXIN RESISTANT 3);
transcription factor | chr1:1136382-1138340 FORWARD
Length = 229
Score = 95.9 bits (237), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 58/77 (75%), Gaps = 3/77 (3%)
Query: 6 PPAKAQVVGWPPIRSYRKNCFQAKKMEAEG--SGIYVKVSMDGAPYLRKIDLKLYKDYSE 63
PPAKAQVVGWPP+RSYRKN + + + G + +VKVSMDGAPYLRKIDL++YK Y E
Sbjct: 77 PPAKAQVVGWPPVRSYRKNVMVSCQKSSGGPEAAAFVKVSMDGAPYLRKIDLRMYKSYDE 136
Query: 64 LLKALEDMF-KFEVGKY 79
L AL +MF F +GK+
Sbjct: 137 LSNALSNMFSSFTMGKH 153
>AT4G29080.1 | Symbols: PAP2, IAA27 | PAP2 (PHYTOCHROME-ASSOCIATED
PROTEIN 2); transcription factor |
chr4:14323665-14325213 REVERSE
Length = 305
Score = 92.0 bits (227), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 48/93 (51%), Positives = 59/93 (63%), Gaps = 17/93 (18%)
Query: 4 TAPPAKAQVVGWPPIRSYRKNCFQAKKMEAEGSG----------------IYVKVSMDGA 47
TAP +KAQVVGWPPIRS+RKN + + + G+ +YVKVSM+GA
Sbjct: 136 TAPASKAQVVGWPPIRSFRKNSMASSQSQKPGNNSETEEAEAKSGPEQPCLYVKVSMEGA 195
Query: 48 PYLRKIDLKLYKDYSELLKALEDMFK-FEVGKY 79
PYLRKIDLK YK Y EL ALE MF F +G++
Sbjct: 196 PYLRKIDLKTYKSYLELSSALEKMFSCFTIGQF 228
>AT4G14550.1 | Symbols: IAA14, SLR | IAA14 (INDOLE-3-ACETIC ACID
INDUCIBLE 14); protein binding / transcription factor/
transcription repressor | chr4:8348521-8349923 REVERSE
Length = 228
Score = 90.5 bits (223), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/85 (56%), Positives = 58/85 (68%), Gaps = 9/85 (10%)
Query: 4 TAPPAKAQVVGWPPIRSYRKNCFQAKKM-EAE-------GSGIYVKVSMDGAPYLRKIDL 55
+ PPAKAQVVGWPP+R+YRKN +K EAE G+ +VKVSMDGAPYLRK+DL
Sbjct: 69 SKPPAKAQVVGWPPVRNYRKNVMANQKSGEAEEAMSSGGGTVAFVKVSMDGAPYLRKVDL 128
Query: 56 KLYKDYSELLKALEDMF-KFEVGKY 79
K+Y Y +L AL MF F +G Y
Sbjct: 129 KMYTSYKDLSDALAKMFSSFTMGSY 153
>AT4G14560.1 | Symbols: IAA1, AXR5 | IAA1 (INDOLE-3-ACETIC ACID
INDUCIBLE); protein binding / transcription factor |
chr4:8361182-8361780 FORWARD
Length = 168
Score = 89.0 bits (219), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 50/79 (63%), Positives = 58/79 (73%), Gaps = 7/79 (8%)
Query: 1 DQETAPPAKAQVVGWPPIRSYRKNCFQAKKMEAEGSGIYVKVSMDGAPYLRKIDLKLYKD 60
++ PPAK Q+VGWPP+RS RKN YVKVSMDGAPYLRKIDLK+YK+
Sbjct: 45 EESAPPPAKTQIVGWPPVRSNRKNNNNKNVS-------YVKVSMDGAPYLRKIDLKMYKN 97
Query: 61 YSELLKALEDMFKFEVGKY 79
Y ELLKALE+MFKF VG+Y
Sbjct: 98 YPELLKALENMFKFTVGEY 116
>AT3G04730.1 | Symbols: IAA16 | IAA16; transcription factor |
chr3:1288993-1290415 REVERSE
Length = 236
Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/97 (51%), Positives = 56/97 (57%), Gaps = 23/97 (23%)
Query: 6 PPAKAQVVGWPPIRSYRKNCFQAKKMEA----EGSG------------------IYVKVS 43
PPAKAQVVGWPP+RS+RKN +K EG+ YVKVS
Sbjct: 65 PPAKAQVVGWPPVRSFRKNVMSGQKPTTGDATEGNDKTSGSSGATSSASACATVAYVKVS 124
Query: 44 MDGAPYLRKIDLKLYKDYSELLKALEDMF-KFEVGKY 79
MDGAPYLRKIDLKLYK Y +L AL MF F +G Y
Sbjct: 125 MDGAPYLRKIDLKLYKTYQDLSNALSKMFSSFTIGNY 161
>AT5G65670.1 | Symbols: IAA9 | IAA9 (INDOLE-3-ACETIC ACID INDUCIBLE
9); transcription factor | chr5:26254463-26256134
FORWARD
Length = 338
Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/79 (56%), Positives = 58/79 (73%), Gaps = 8/79 (10%)
Query: 8 AKAQVVGWPPIRSYRKN-----CFQAKKMEAE-GSG-IYVKVSMDGAPYLRKIDLKLYKD 60
AKAQ+VGWPP+RSYRKN C + +++ GSG ++VKVSMDGAPYLRK+DL+ Y +
Sbjct: 180 AKAQIVGWPPVRSYRKNTLATTCKNSDEVDGRPGSGALFVKVSMDGAPYLRKVDLRSYTN 239
Query: 61 YSELLKALEDMF-KFEVGK 78
Y EL ALE MF F +G+
Sbjct: 240 YGELSSALEKMFTTFTLGQ 258
>AT5G65670.2 | Symbols: IAA9 | IAA9 (INDOLE-3-ACETIC ACID INDUCIBLE
9); transcription factor | chr5:26254463-26256134
FORWARD
Length = 336
Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/79 (56%), Positives = 58/79 (73%), Gaps = 8/79 (10%)
Query: 8 AKAQVVGWPPIRSYRKN-----CFQAKKMEAE-GSG-IYVKVSMDGAPYLRKIDLKLYKD 60
AKAQ+VGWPP+RSYRKN C + +++ GSG ++VKVSMDGAPYLRK+DL+ Y +
Sbjct: 180 AKAQIVGWPPVRSYRKNTLATTCKNSDEVDGRPGSGALFVKVSMDGAPYLRKVDLRSYTN 239
Query: 61 YSELLKALEDMF-KFEVGK 78
Y EL ALE MF F +G+
Sbjct: 240 YGELSSALEKMFTTFTLGQ 258
>AT2G22670.2 | Symbols: IAA8 | IAA8; transcription factor |
chr2:9637136-9638459 FORWARD
Length = 319
Score = 86.7 bits (213), Expect = 3e-18, Method: Composition-based stats.
Identities = 46/83 (55%), Positives = 55/83 (66%), Gaps = 9/83 (10%)
Query: 5 APPAKAQVVGWPPIRSYRKNCFQAKKM----EAEGSG----IYVKVSMDGAPYLRKIDLK 56
AP AKAQVVGWPPIRSYRKN + E +G ++VKVSMDGAPYLRK+DL+
Sbjct: 159 APAAKAQVVGWPPIRSYRKNTMASSTSKNTDEVDGKPGLGVLFVKVSMDGAPYLRKVDLR 218
Query: 57 LYKDYSELLKALEDMFK-FEVGK 78
Y Y +L ALE MF F +G+
Sbjct: 219 TYTSYQQLSSALEKMFSCFTLGQ 241
>AT2G22670.3 | Symbols: IAA8 | IAA8; transcription factor |
chr2:9637136-9638459 FORWARD
Length = 321
Score = 86.7 bits (213), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/85 (54%), Positives = 55/85 (64%), Gaps = 9/85 (10%)
Query: 3 ETAPPAKAQVVGWPPIRSYRKNCFQAKKMEAE-------GSGI-YVKVSMDGAPYLRKID 54
AP AKAQVVGWPPIRSYRKN + + G G+ +VKVSMDGAPYLRK+D
Sbjct: 157 NNAPAAKAQVVGWPPIRSYRKNTMASSTSKNTDEVDGKPGLGVLFVKVSMDGAPYLRKVD 216
Query: 55 LKLYKDYSELLKALEDMFK-FEVGK 78
L+ Y Y +L ALE MF F +G+
Sbjct: 217 LRTYTSYQQLSSALEKMFSCFTLGQ 241
>AT2G22670.1 | Symbols: IAA8 | IAA8; transcription factor |
chr2:9637136-9638459 FORWARD
Length = 321
Score = 86.7 bits (213), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/85 (54%), Positives = 55/85 (64%), Gaps = 9/85 (10%)
Query: 3 ETAPPAKAQVVGWPPIRSYRKNCFQAKKMEAE-------GSGI-YVKVSMDGAPYLRKID 54
AP AKAQVVGWPPIRSYRKN + + G G+ +VKVSMDGAPYLRK+D
Sbjct: 157 NNAPAAKAQVVGWPPIRSYRKNTMASSTSKNTDEVDGKPGLGVLFVKVSMDGAPYLRKVD 216
Query: 55 LKLYKDYSELLKALEDMFK-FEVGK 78
L+ Y Y +L ALE MF F +G+
Sbjct: 217 LRTYTSYQQLSSALEKMFSCFTLGQ 241
>AT3G23050.2 | Symbols: IAA7, AXR2 | IAA7 (INDOLE-3-ACETIC ACID 7);
transcription factor | chr3:8194768-8196214 FORWARD
Length = 210
Score = 85.9 bits (211), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 47/93 (50%), Positives = 56/93 (60%), Gaps = 17/93 (18%)
Query: 4 TAPPAKAQVVGWPPIRSYRKNCFQAKKMEA---EGSG-------------IYVKVSMDGA 47
+ PPAKAQVVGWPP+R+YRKN +K + E S VKVSMDGA
Sbjct: 75 SKPPAKAQVVGWPPVRNYRKNMMTQQKTSSGAEEASSEKAGNFGGGAAGAGLVKVSMDGA 134
Query: 48 PYLRKIDLKLYKDYSELLKALEDMF-KFEVGKY 79
PYLRK+DLK+YK Y +L AL MF F +G Y
Sbjct: 135 PYLRKVDLKMYKSYQDLSDALAKMFSSFTMGNY 167
>AT3G23050.1 | Symbols: IAA7, AXR2 | IAA7 (INDOLE-3-ACETIC ACID 7);
transcription factor | chr3:8194768-8196716 FORWARD
Length = 243
Score = 85.5 bits (210), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 47/93 (50%), Positives = 56/93 (60%), Gaps = 17/93 (18%)
Query: 4 TAPPAKAQVVGWPPIRSYRKNCFQAKKMEA---EGSG-------------IYVKVSMDGA 47
+ PPAKAQVVGWPP+R+YRKN +K + E S VKVSMDGA
Sbjct: 75 SKPPAKAQVVGWPPVRNYRKNMMTQQKTSSGAEEASSEKAGNFGGGAAGAGLVKVSMDGA 134
Query: 48 PYLRKIDLKLYKDYSELLKALEDMF-KFEVGKY 79
PYLRK+DLK+YK Y +L AL MF F +G Y
Sbjct: 135 PYLRKVDLKMYKSYQDLSDALAKMFSSFTMGNY 167
>AT3G15540.1 | Symbols: IAA19, MSG2 | IAA19 (INDOLE-3-ACETIC ACID
INDUCIBLE 19); transcription factor |
chr3:5264100-5265378 FORWARD
Length = 197
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 50/72 (69%), Gaps = 4/72 (5%)
Query: 5 APPAKAQVVGWPPIRSYRK--NCFQAKKMEAEGSGIYVKVSMDGAPYLRKIDLKLYKDYS 62
+P AK+QVVGWPP+ SYRK +C +A + G G YVKVSMDG PYLRK+DL + Y
Sbjct: 64 SPAAKSQVVGWPPVCSYRKKNSCKEASTTKV-GLG-YVKVSMDGVPYLRKMDLGSSQGYD 121
Query: 63 ELLKALEDMFKF 74
+L AL+ +F F
Sbjct: 122 DLAFALDKLFGF 133
>AT1G52830.1 | Symbols: IAA6, SHY1 | IAA6 (INDOLE-3-ACETIC ACID 6);
transcription factor | chr1:19672670-19673559 REVERSE
Length = 189
Score = 68.9 bits (167), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 3/72 (4%)
Query: 1 DQETAPPAKAQVVGWPPIRSYRKNCFQAKKMEAEGSGIYVKVSMDGAPYLRKIDLKLYKD 60
+ E+ P K+Q VGWPP+ SYR+ + +A G YVKVSMDG PY+RKIDL
Sbjct: 60 EDESLPVVKSQAVGWPPVCSYRRKKNNEEASKAIG---YVKVSMDGVPYMRKIDLGSSNS 116
Query: 61 YSELLKALEDMF 72
Y L+ LE++F
Sbjct: 117 YINLVTVLENLF 128
>AT1G15580.1 | Symbols: IAA5, ATAUX2-27, AUX2-27 | IAA5
(INDOLE-3-ACETIC ACID INDUCIBLE 5); transcription factor
| chr1:5365764-5366460 REVERSE
Length = 163
Score = 68.9 bits (167), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 48/73 (65%), Gaps = 7/73 (9%)
Query: 1 DQETAPPAKAQVVGWPPIRSYR-KNCFQAKKMEAEGSGIYVKVSMDGAPYLRKIDLKLYK 59
D + P K+QVVGWPP+ SYR KN + K YVKVS+DGA +LRKIDL++YK
Sbjct: 43 DLKCEPAKKSQVVGWPPVCSYRRKNSLERTKSS------YVKVSVDGAAFLRKIDLEMYK 96
Query: 60 DYSELLKALEDMF 72
Y +L AL+ +F
Sbjct: 97 CYQDLASALQILF 109
>AT4G28640.1 | Symbols: IAA11 | IAA11 (INDOLE-3-ACETIC ACID
INDUCIBLE 11); transcription factor |
chr4:14142288-14143755 FORWARD
Length = 246
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 44/92 (47%), Gaps = 22/92 (23%)
Query: 3 ETAPPAKAQVVGWPPIRSYRKNCF--QAKKMEAEG--------------------SGIYV 40
++ QVVGWPPIR+YR N QAK E + ++V
Sbjct: 80 DSMAATSGQVVGWPPIRTYRMNSMVNQAKASATEDPNLEISQAVNKNRSDSTKMRNSMFV 139
Query: 41 KVSMDGAPYLRKIDLKLYKDYSELLKALEDMF 72
KV+MDG P RKIDL +K Y L LE+MF
Sbjct: 140 KVTMDGIPIGRKIDLNAHKCYESLSNTLEEMF 171
>AT1G80390.1 | Symbols: IAA15 | IAA15 (INDOLE-3-ACETIC ACID
INDUCIBLE 15); transcription factor |
chr1:30221780-30222702 REVERSE
Length = 179
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 40/63 (63%), Gaps = 10/63 (15%)
Query: 11 QVVGWPPIRSYRKNCFQAKKMEAEGSGIYVKVSMDGAPYLRKIDLKLYKDYSELLKALED 70
Q+VGWPP+ + RK + YVKV++DGA YLRK+DL +Y Y +L ALE+
Sbjct: 70 QLVGWPPVATARKTVRRK----------YVKVALDGAAYLRKVDLGMYDCYGQLFTALEN 119
Query: 71 MFK 73
MF+
Sbjct: 120 MFQ 122
>AT4G28640.2 | Symbols: IAA11 | IAA11 (INDOLE-3-ACETIC ACID
INDUCIBLE 11); transcription factor |
chr4:14142288-14143928 FORWARD
Length = 302
Score = 59.3 bits (142), Expect = 5e-10, Method: Composition-based stats.
Identities = 35/92 (38%), Positives = 44/92 (47%), Gaps = 22/92 (23%)
Query: 3 ETAPPAKAQVVGWPPIRSYRKNCF--QAKKMEAEG--------------------SGIYV 40
++ QVVGWPPIR+YR N QAK E + ++V
Sbjct: 80 DSMAATSGQVVGWPPIRTYRMNSMVNQAKASATEDPNLEISQAVNKNRSDSTKMRNSMFV 139
Query: 41 KVSMDGAPYLRKIDLKLYKDYSELLKALEDMF 72
KV+MDG P RKIDL +K Y L LE+MF
Sbjct: 140 KVTMDGIPIGRKIDLNAHKCYESLSNTLEEMF 171
>AT2G33310.3 | Symbols: IAA13 | IAA13; transcription factor |
chr2:14114569-14115757 REVERSE
Length = 246
Score = 58.9 bits (141), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 46/96 (47%), Gaps = 27/96 (28%)
Query: 4 TAPPAKAQVVGWPPIRSYRKNCF---QAKK--MEAEGSGI-------------------- 38
++PP +QVVGWPPI S+R N QA K E E +G
Sbjct: 68 SSPPRSSQVVGWPPIGSHRMNSLVNNQATKSAREEEEAGKKKVKDDEPKDVTKKVNGKVQ 127
Query: 39 --YVKVSMDGAPYLRKIDLKLYKDYSELLKALEDMF 72
++KV+MDG RK+DL + Y L + LEDMF
Sbjct: 128 VGFIKVNMDGVAIGRKVDLNAHSSYENLAQTLEDMF 163
>AT2G33310.1 | Symbols: IAA13 | IAA13; transcription factor |
chr2:14114569-14115757 REVERSE
Length = 246
Score = 58.9 bits (141), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 46/96 (47%), Gaps = 27/96 (28%)
Query: 4 TAPPAKAQVVGWPPIRSYRKNCF---QAKK--MEAEGSGI-------------------- 38
++PP +QVVGWPPI S+R N QA K E E +G
Sbjct: 68 SSPPRSSQVVGWPPIGSHRMNSLVNNQATKSAREEEEAGKKKVKDDEPKDVTKKVNGKVQ 127
Query: 39 --YVKVSMDGAPYLRKIDLKLYKDYSELLKALEDMF 72
++KV+MDG RK+DL + Y L + LEDMF
Sbjct: 128 VGFIKVNMDGVAIGRKVDLNAHSSYENLAQTLEDMF 163
>AT3G16500.1 | Symbols: PAP1, IAA26 | PAP1 (PHYTOCHROME-ASSOCIATED
PROTEIN 1); transcription factor | chr3:5612801-5614208
REVERSE
Length = 269
Score = 57.4 bits (137), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 25/94 (26%)
Query: 2 QETAPPAKAQVVGWPPIRSYRKNCFQA----------------------KKMEAEGSGIY 39
+ TAP VVGWPP+RS+RKN K++E + G++
Sbjct: 97 KRTAP---GPVVGWPPVRSFRKNLASTSSSKLGNESSHGGQINKSDDGEKQVETKKEGMF 153
Query: 40 VKVSMDGAPYLRKIDLKLYKDYSELLKALEDMFK 73
VK++MDG P RK+DL Y Y +L ++ +F+
Sbjct: 154 VKINMDGVPIGRKVDLNAYNSYEQLSFVVDKLFR 187
>AT1G04550.1 | Symbols: IAA12, BDL | IAA12 (AUXIN-INDUCED PROTEIN
12); transcription factor/ transcription repressor |
chr1:1240582-1241375 FORWARD
Length = 173
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 50/111 (45%), Gaps = 29/111 (26%)
Query: 2 QETAPPAKAQVVGWPPIRSYRKNCF-QAKKMEA----EGSG------------------- 37
Q +PP +QVVGWPPI +R N + M+A EG G
Sbjct: 60 QGASPPRSSQVVGWPPIGLHRMNSLVNNQAMKAARAEEGDGEKKVVKNDELKDVSMKVNP 119
Query: 38 -----IYVKVSMDGAPYLRKIDLKLYKDYSELLKALEDMFKFEVGKYYYTL 83
+VKV+MDG RK+D++ + Y L + LE+MF G Y + +
Sbjct: 120 KVQGLGFVKVNMDGVGIGRKVDMRAHSSYENLAQTLEEMFFGMTGLYCFQM 170
>AT2G33310.2 | Symbols: IAA13 | IAA13; transcription factor |
chr2:14114569-14115757 REVERSE
Length = 247
Score = 55.5 bits (132), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 47/97 (48%), Gaps = 28/97 (28%)
Query: 4 TAPP-AKAQVVGWPPIRSYRKNCF---QAKK--MEAEGSGI------------------- 38
++PP + +QVVGWPPI S+R N QA K E E +G
Sbjct: 68 SSPPRSSSQVVGWPPIGSHRMNSLVNNQATKSAREEEEAGKKKVKDDEPKDVTKKVNGKV 127
Query: 39 ---YVKVSMDGAPYLRKIDLKLYKDYSELLKALEDMF 72
++KV+MDG RK+DL + Y L + LEDMF
Sbjct: 128 QVGFIKVNMDGVAIGRKVDLNAHSSYENLAQTLEDMF 164
>AT5G25890.1 | Symbols: IAA28, IAR2 | IAA28 (INDOLE-3-ACETIC ACID
INDUCIBLE 28); transcription factor |
chr5:9033480-9034554 FORWARD
Length = 175
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 6/69 (8%)
Query: 10 AQVVGWPPIRSYRKNC------FQAKKMEAEGSGIYVKVSMDGAPYLRKIDLKLYKDYSE 63
A VVGWPP+RS R+N KK E +YVK++M+G P RK++L Y +Y +
Sbjct: 47 APVVGWPPVRSSRRNLTAQLKEEMKKKESDEEKELYVKINMEGVPIGRKVNLSAYNNYQQ 106
Query: 64 LLKALEDMF 72
L A++ +F
Sbjct: 107 LSHAVDQLF 115
>AT1G04550.2 | Symbols: IAA12, BDL | IAA12 (AUXIN-INDUCED PROTEIN
12); transcription factor/ transcription repressor |
chr1:1240582-1241810 FORWARD
Length = 239
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 46/100 (46%), Gaps = 29/100 (29%)
Query: 2 QETAPPAKAQVVGWPPIRSYRKNCF-QAKKMEA----EGSG------------------- 37
Q +PP +QVVGWPPI +R N + M+A EG G
Sbjct: 60 QGASPPRSSQVVGWPPIGLHRMNSLVNNQAMKAARAEEGDGEKKVVKNDELKDVSMKVNP 119
Query: 38 -----IYVKVSMDGAPYLRKIDLKLYKDYSELLKALEDMF 72
+VKV+MDG RK+D++ + Y L + LE+MF
Sbjct: 120 KVQGLGFVKVNMDGVGIGRKVDMRAHSSYENLAQTLEEMF 159
>AT3G17600.1 | Symbols: IAA31 | IAA31 (INDOLE-3-ACETIC ACID
INDUCIBLE 31); transcription factor |
chr3:6020281-6021040 REVERSE
Length = 158
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 4 TAPPAKAQVVGWPPIRSYRKNCFQAKKMEAEG--SGIYVKVSMDGAPYLRKIDLKLYKDY 61
+ P + WPPI+S ++ + +++ G + ++VKV M+G P RK+DL ++ Y
Sbjct: 37 STSPQREARQDWPPIKSRLRDTLKGRRLLRRGDDTSLFVKVYMEGVPIGRKLDLCVFSGY 96
Query: 62 SELLKALEDMFKFEV 76
LL+ L MF +
Sbjct: 97 ESLLENLSHMFDTSI 111