Jatropha Genome Database

JcCB0890131.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0890131.10 - phase: 2 /partial
         (379 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G67500.1 | Symbols: ATREV3 | ATREV3 (ARABIDOPSIS THALIANA REC...    50   2e-06

>AT1G67500.1 | Symbols: ATREV3 | ATREV3 (ARABIDOPSIS THALIANA
           RECOVERY PROTEIN 3); DNA binding / DNA-directed DNA
           polymerase | chr1:25287707-25296714 REVERSE
          Length = 1890

 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 46/97 (47%), Gaps = 24/97 (24%)

Query: 21  KREKSLWGSLPFSMT---QKGTDESEAVWSNIADACVVEGQDCIG----TSMPRNEGGKH 73
           K   S+WG LPF++T   QK  D + A              D +G    +S P NE   +
Sbjct: 588 KPSNSVWGPLPFTLTKNLQKDFDSTNA-------------SDKLGLTKISSYPMNEMTDN 634

Query: 74  SDTPMKNPDTDFCQIGD---LVGCSVRDLMRRKR-CH 106
              P+K    D C   D   L GCS+RDLMR+KR CH
Sbjct: 635 YIVPVKEHQADVCNTIDRNVLAGCSLRDLMRKKRLCH 671