Jatropha Genome Database

JcCB0888501.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0888501.10 + phase: 0 /pseudo/partial
         (61 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G28830.1 | Symbols:  | calcium-binding EF hand family protein...    74   3e-14

>AT5G28830.1 | Symbols:  | calcium-binding EF hand family protein |
           chr5:10856801-10858394 FORWARD
          Length = 324

 Score = 73.6 bits (179), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 32/43 (74%), Positives = 38/43 (88%)

Query: 19  TDLDKEDKGKISKGEIRDALVHMGVEMGIPPFKEFPLLNDILK 61
           TDLD+EDKGK+ K EIR ALVHMGVEMG+PP  EFP+L+DI+K
Sbjct: 130 TDLDEEDKGKLCKSEIRKALVHMGVEMGVPPLSEFPILDDIIK 172