Jatropha Genome Database

JcCB0860891.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0860891.10 - phase: 0 /partial
         (78 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G77750.1 | Symbols:  | 30S ribosomal protein S13, chloroplast...    51   1e-07
AT5G14320.1 | Symbols:  | 30S ribosomal protein S13, chloroplast...    47   3e-06

>AT1G77750.1 | Symbols:  | 30S ribosomal protein S13, chloroplast,
           putative | chr1:29230346-29231490 REVERSE
          Length = 154

 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 43/68 (63%), Gaps = 1/68 (1%)

Query: 4   NIKIKEFSKYQIDQIEQMIGQDHVVHWELKRGERADIEGLISISCYRGIRHQDGLPLRGQ 63
           N   ++ +  ++  + + +GQ H    EL+R   ++I+ L+ + CYRG RH+ GLP RGQ
Sbjct: 71  NKLARDLTGKELIDLREEVGQ-HQHGDELRRRVGSEIQRLVEVDCYRGSRHRHGLPCRGQ 129

Query: 64  QTHTNART 71
           +T TNART
Sbjct: 130 RTSTNART 137


>AT5G14320.1 | Symbols:  | 30S ribosomal protein S13, chloroplast
           (CS13) | chr5:4617839-4618772 REVERSE
          Length = 169

 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 29/46 (63%)

Query: 26  HVVHWELKRGERADIEGLISISCYRGIRHQDGLPLRGQQTHTNART 71
           +++  +L+R     I+ L  I CYRG+RH  GLP RGQ+T  N RT
Sbjct: 108 YMIEGDLRRFNALAIKRLKEIQCYRGVRHIQGLPCRGQRTKNNCRT 153