Jatropha Genome Database

JcCB0838301.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0838301.10 + phase: 2 /partial
         (51 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G20930.1 | Symbols:  | 3-hydroxyisobutyrate dehydrogenase, pu...    59   7e-10

>AT4G20930.1 | Symbols:  | 3-hydroxyisobutyrate dehydrogenase,
           putative | chr4:11198627-11201036 REVERSE
          Length = 347

 Score = 58.9 bits (141), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 25/34 (73%), Positives = 30/34 (88%)

Query: 1   DSYNPVPGVMQGVPASRDYTGGFSSKLMVGGLSL 34
           D+YNPVPGVM+GVP+SRDY GGF+SKLM   L+L
Sbjct: 265 DAYNPVPGVMKGVPSSRDYNGGFASKLMAKDLNL 298