Jatropha Genome Database

JcCB0832121.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0832121.10 - phase: 0 /pseudo
         (125 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G64370.1 | Symbols: BETA-UP | BETA-UP (beta-ureidopropionase)...   107   2e-24

>AT5G64370.1 | Symbols: BETA-UP | BETA-UP (beta-ureidopropionase);
          beta-ureidopropionase | chr5:25739264-25741031 FORWARD
          Length = 408

 Score =  107 bits (266), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 47/72 (65%), Positives = 59/72 (81%)

Query: 13 IFEDNHISNDGSICGYDSLHHLLCANLKPHLFKEVSRLLLGMNCGKAIETLVLPDSAKVI 72
          I E+   S +GSICGYDSLH LL ANLKP L++EV+RLLLG NCG+++E +VLP+SAK +
Sbjct: 5  ISENGETSAEGSICGYDSLHQLLSANLKPELYQEVNRLLLGRNCGRSLEQIVLPESAKAL 64

Query: 73 SSKHDFDLQVVA 84
          SSKHDFDLQ  +
Sbjct: 65 SSKHDFDLQAAS 76