Jatropha Genome Database

JcCB0828941.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0828941.10 + phase: 0 /partial
         (116 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G21870.2 | Symbols:  | unknown protein | chr2:9320612-9322618...   129   4e-31
AT2G21870.1 | Symbols:  | unknown protein | chr2:9320456-9322618...   129   5e-31

>AT2G21870.2 | Symbols:  | unknown protein | chr2:9320612-9322618
           REVERSE
          Length = 220

 Score =  129 bits (323), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 67/88 (76%), Positives = 78/88 (88%)

Query: 3   LIDELGAEAMMMDALEKVEKEIKKPLMRNDKKGMALLLTEFDNINKKLGIRKEDLPKYEE 62
           L DELGAEAMM +ALEKVEK+IKKPL+R+DKKGM LL+ EF+  NKKLGIRKEDLPKYEE
Sbjct: 133 LTDELGAEAMMFEALEKVEKDIKKPLLRSDKKGMDLLVAEFEKGNKKLGIRKEDLPKYEE 192

Query: 63  ELENKIAKAQLEELKKDALEAMETQKKR 90
            LE  +AKAQL+ELK DA+EAME+QKK+
Sbjct: 193 NLELSMAKAQLDELKSDAVEAMESQKKK 220


>AT2G21870.1 | Symbols:  | unknown protein | chr2:9320456-9322618
           REVERSE
          Length = 240

 Score =  129 bits (323), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 67/88 (76%), Positives = 78/88 (88%)

Query: 3   LIDELGAEAMMMDALEKVEKEIKKPLMRNDKKGMALLLTEFDNINKKLGIRKEDLPKYEE 62
           L DELGAEAMM +ALEKVEK+IKKPL+R+DKKGM LL+ EF+  NKKLGIRKEDLPKYEE
Sbjct: 133 LTDELGAEAMMFEALEKVEKDIKKPLLRSDKKGMDLLVAEFEKGNKKLGIRKEDLPKYEE 192

Query: 63  ELENKIAKAQLEELKKDALEAMETQKKR 90
            LE  +AKAQL+ELK DA+EAME+QKK+
Sbjct: 193 NLELSMAKAQLDELKSDAVEAMESQKKK 220