Jatropha Genome Database

JcCB0824821.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0824821.10 - phase: 2 /partial
         (135 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G34750.1 | Symbols:  | RNA polymerase I specific transcriptio...   156   4e-39
AT1G30590.1 | Symbols:  | RNA polymerase I specific transcriptio...   154   2e-38
AT2G39240.1 | Symbols:  | RNA polymerase I transcription factor/...   142   5e-35

>AT2G34750.1 | Symbols:  | RNA polymerase I specific transcription
           initiation factor RRN3 family protein |
           chr2:14660449-14663792 REVERSE
          Length = 613

 Score =  156 bits (394), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 73/117 (62%), Positives = 90/117 (76%), Gaps = 2/117 (1%)

Query: 18  RLVDWCLEYCKTQDGHMNPKAHRVFYSGCQAIMYVLCFRMRSIMDVPGLKSHLLLKPMEL 77
           RL+D C+ YC+T +    P+AH++F+SGCQAIMYVLCFRMRSI+DVP  +S L   P+E 
Sbjct: 401 RLIDECVGYCRTCNDDTRPEAHQIFFSGCQAIMYVLCFRMRSILDVPRFRSQL--TPLES 458

Query: 78  ILKHKLDPLKVCLPSIVEEFLKQAKAAHLFTTPETFISEDLLESEFSREFGGLERLD 134
           IL HKL+PL VCLPS+V EFL+QAK   LF   ++FI +DLLESE SR FGG ERLD
Sbjct: 459 ILMHKLNPLMVCLPSVVAEFLRQAKEGGLFIVSDSFIFDDLLESELSRAFGGFERLD 515


>AT1G30590.1 | Symbols:  | RNA polymerase I specific transcription
           initiation factor RRN3 family protein |
           chr1:10835976-10839524 REVERSE
          Length = 604

 Score =  154 bits (389), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 74/117 (63%), Positives = 89/117 (76%), Gaps = 2/117 (1%)

Query: 18  RLVDWCLEYCKTQDGHMNPKAHRVFYSGCQAIMYVLCFRMRSIMDVPGLKSHLLLKPMEL 77
           RLVD C EYC T +  + P+AH+VFYSGCQAI+YVLCFRMRSI+++P  +S    + +E 
Sbjct: 388 RLVDECAEYCGTCNDDVKPEAHQVFYSGCQAILYVLCFRMRSIVEIPRFQSQF--RSLES 445

Query: 78  ILKHKLDPLKVCLPSIVEEFLKQAKAAHLFTTPETFISEDLLESEFSREFGGLERLD 134
           IL HKL+PL VCLPS+V EFLKQAKA  LF   E+FI +DL ESE SR FGG ERLD
Sbjct: 446 ILSHKLNPLLVCLPSVVSEFLKQAKAGGLFIVSESFIFDDLHESELSRAFGGFERLD 502


>AT2G39240.1 | Symbols:  | RNA polymerase I transcription factor/
           binding | chr2:16384786-16387827 REVERSE
          Length = 573

 Score =  142 bits (359), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 68/125 (54%), Positives = 85/125 (68%), Gaps = 2/125 (1%)

Query: 5   NIFDVDDIIAWFFRLVDWCLEYCKTQDGHMNPKAHRVFYSGCQAIMYVLCFRMRSIMDVP 64
           N      + +   RLVD C +YC+T +    P+ H+VFYSGCQAI+YVLCFRMRSI++VP
Sbjct: 360 NFLSASFVASMLKRLVDECADYCRTCNDDARPEVHQVFYSGCQAILYVLCFRMRSILEVP 419

Query: 65  GLKSHLLLKPMELILKHKLDPLKVCLPSIVEEFLKQAKAAHLFTTPETFISEDLLESEFS 124
             +S   L P+E +L HKLDPL+VCL S+V EFL QAKA  LF   + FI +DL ESE S
Sbjct: 420 HFQSQ--LTPLESVLSHKLDPLRVCLSSVVSEFLIQAKACGLFIVSDAFIFDDLSESELS 477

Query: 125 REFGG 129
           R  GG
Sbjct: 478 RALGG 482