Jatropha Genome Database

JcCB0815741.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0815741.10 + phase: 1 /TE/partial
         (554 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ATMG00710.1 | Symbols: ORF120 | hypothetical protein | chrM:2075...    79   6e-15

>ATMG00710.1 | Symbols: ORF120 | hypothetical protein |
           chrM:207553-207915 REVERSE
          Length = 120

 Score = 79.3 bits (194), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 36/71 (50%), Positives = 52/71 (73%)

Query: 451 INHTIVERVRSMLKMANLPKPFWGEAVNTAVYLINRLPSTALDFDILEKVWTGRNISYSH 510
           +N TI+E+VRSML    LPK F  +A NTAV++IN+ PSTA++F + ++VW     +YS+
Sbjct: 1   MNRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSY 60

Query: 511 LRVFGCNAFMH 521
           LR FGC A++H
Sbjct: 61  LRRFGCVAYIH 71