Jatropha Genome Database

JcCB0813871.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0813871.10 + phase: 0 
         (202 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G51950.1 | Symbols: IAA18 | IAA18 (INDOLE-3-ACETIC ACID INDUC...    62   2e-10
AT3G16500.1 | Symbols: PAP1, IAA26 | PAP1 (PHYTOCHROME-ASSOCIATE...    54   5e-08

>AT1G51950.1 | Symbols: IAA18 | IAA18 (INDOLE-3-ACETIC ACID
           INDUCIBLE 18); transcription factor |
           chr1:19305670-19307130 FORWARD
          Length = 267

 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/117 (40%), Positives = 64/117 (54%), Gaps = 21/117 (17%)

Query: 1   MEGGSKNGEACPQLLDL-IPRERE-WLVKRADERS----TEEKKLELRLGPPGEEWSLGK 54
           MEG S+NGE  P+LLDL IP+ER  W     DE++    TEEKKLEL+LGPPGEE     
Sbjct: 1   MEGYSRNGEISPKLLDLMIPQERRNWF---HDEKNSVFKTEEKKLELKLGPPGEEDDDES 57

Query: 55  TAKNSDDRVRDEFLLSLGNQQTHKFSSPENTRAGSVWFNQQLSQQAKAATPFLQFPP 111
             ++     +D+ +LSL      K+ SP +T+          S +  A  P + +PP
Sbjct: 58  MIRHMKKEPKDKSILSLAG----KYFSPSSTKT--------TSHKRTAPGPVVGWPP 102


>AT3G16500.1 | Symbols: PAP1, IAA26 | PAP1 (PHYTOCHROME-ASSOCIATED
           PROTEIN 1); transcription factor | chr3:5612801-5614208
           REVERSE
          Length = 269

 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 70/135 (51%), Gaps = 11/135 (8%)

Query: 1   MEGGSKNGEACPQLLDLIPREREWLVKRADERSTE-EKKLELRLGPPGEEWSLGKTAKNS 59
           MEG  +N E  P+LLDLIP+ R+W   + D+ +T+ EKKLELRLGPPG +       K  
Sbjct: 1   MEGCPRNREIGPKLLDLIPQGRKWY--QEDKNNTDQEKKLELRLGPPGGDEEDHSAIKKK 58

Query: 60  DDRVRDEFLLSLGNQQTHKFSSPENTRAGSVWFNQQLSQQAKAATPFLQFPPKTVTTTQQ 119
           +  +R+       ++  H F+    + +        +SQ+  A  P + +PP  V + ++
Sbjct: 59  NTEIRN-IKKETEDKSFHCFNGNHFSPSNKTTSVPHISQKRTAPGPVVGWPP--VRSFRK 115

Query: 120 SLPVT-----GKESS 129
           +L  T     G ESS
Sbjct: 116 NLASTSSSKLGNESS 130