Jatropha Genome Database

JcCB0813641.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0813641.10 + phase: 0 /pseudo/partial
         (166 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G11397.1 | Symbols: PRA1.A3 | PRA1.A3 (PRENYLATED RAB ACCEPTO...   179   5e-46
AT5G05987.1 | Symbols: PRA1.A2 | PRA1.A2 (PRENYLATED RAB ACCEPTO...   174   2e-44
AT5G02040.2 | Symbols: PRA1.A1 | PRA1.A1 (PRENYLATED RAB ACCEPTO...   151   2e-37
AT5G02040.1 | Symbols: PRA1.A1 | PRA1.A1 (PRENYLATED RAB ACCEPTO...   151   2e-37

>AT3G11397.1 | Symbols: PRA1.A3 | PRA1.A3 (PRENYLATED RAB ACCEPTOR
           1.A3) | chr3:3576173-3577765 FORWARD
          Length = 209

 Score =  179 bits (455), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 90/125 (72%), Positives = 103/125 (82%), Gaps = 1/125 (0%)

Query: 43  LGANYLFCSFAATFSEKVTRTVRKFSPHLAAKMRPPHMPVIRGRSA-KKSVYICGQPRGV 101
           L   +L  SFAATF+EK+ RT+R FSPHLAAKMRPPHMPVIRGRSA +K+VYICGQPR V
Sbjct: 85  LSLAFLNDSFAATFNEKMIRTIRHFSPHLAAKMRPPHMPVIRGRSATRKTVYICGQPRLV 144

Query: 102 CVFLFSAASIILWFTSGSLLYVLWAFGIGLLVTIIHASVRTPNLKARLNTFREEFRAVWR 161
            V L   AS +LWFTS  LL+VL+A    LL+ ++HAS+RTPNLKARLNTFREEFRAVWR
Sbjct: 145 FVLLGLTASFVLWFTSCGLLWVLYALTTALLMILLHASLRTPNLKARLNTFREEFRAVWR 204

Query: 162 NYSEL 166
           NYSEL
Sbjct: 205 NYSEL 209


>AT5G05987.1 | Symbols: PRA1.A2 | PRA1.A2 (PRENYLATED RAB ACCEPTOR
           1.A2) | chr5:1804881-1806559 FORWARD
          Length = 209

 Score =  174 bits (441), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 85/125 (68%), Positives = 102/125 (81%), Gaps = 1/125 (0%)

Query: 43  LGANYLFCSFAATFSEKVTRTVRKFSPHLAAKMRPPHMPVIRGRS-AKKSVYICGQPRGV 101
           L   +L  SFAA+F+EK  RT+R FSPH+AAKMRPPHMPVIRGRS A+K+VY+CG+PR V
Sbjct: 85  LSIAFLNDSFAASFNEKFIRTIRHFSPHMAAKMRPPHMPVIRGRSTARKTVYVCGKPRWV 144

Query: 102 CVFLFSAASIILWFTSGSLLYVLWAFGIGLLVTIIHASVRTPNLKARLNTFREEFRAVWR 161
            V  F  AS+++WF+S  LL+VL+A    L V I+HAS+RTPNLKARLNTFREEFRAVWR
Sbjct: 145 FVITFLTASLVMWFSSCGLLWVLYALLTSLAVIIVHASIRTPNLKARLNTFREEFRAVWR 204

Query: 162 NYSEL 166
           NYSEL
Sbjct: 205 NYSEL 209


>AT5G02040.2 | Symbols: PRA1.A1 | PRA1.A1 (PRENYLATED RAB ACCEPTOR
           1.A1) | chr5:401163-402471 FORWARD
          Length = 209

 Score =  151 bits (381), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 77/117 (65%), Positives = 89/117 (76%), Gaps = 1/117 (0%)

Query: 51  SFAATFSEKVTRTVRKFSPHLAAKMRPPHMPVIRGR-SAKKSVYICGQPRGVCVFLFSAA 109
           SFA +FSEK TRTVR+FSP LAAKMRPP  PV RGR S+K+++++CGQPR V V   S  
Sbjct: 93  SFAGSFSEKATRTVRRFSPQLAAKMRPPLTPVTRGRPSSKRAIHVCGQPRWVFVLTCSLV 152

Query: 110 SIILWFTSGSLLYVLWAFGIGLLVTIIHASVRTPNLKARLNTFREEFRAVWRNYSEL 166
           S  LW+ S  LL V  A  I  L TI+HAS+RTPNLKAR NTFREEFRAVWRNYSE+
Sbjct: 153 SFALWYISSGLLRVSVALLIAHLATILHASLRTPNLKARFNTFREEFRAVWRNYSEI 209


>AT5G02040.1 | Symbols: PRA1.A1 | PRA1.A1 (PRENYLATED RAB ACCEPTOR
           1.A1) | chr5:401163-402471 FORWARD
          Length = 209

 Score =  151 bits (381), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 77/117 (65%), Positives = 89/117 (76%), Gaps = 1/117 (0%)

Query: 51  SFAATFSEKVTRTVRKFSPHLAAKMRPPHMPVIRGR-SAKKSVYICGQPRGVCVFLFSAA 109
           SFA +FSEK TRTVR+FSP LAAKMRPP  PV RGR S+K+++++CGQPR V V   S  
Sbjct: 93  SFAGSFSEKATRTVRRFSPQLAAKMRPPLTPVTRGRPSSKRAIHVCGQPRWVFVLTCSLV 152

Query: 110 SIILWFTSGSLLYVLWAFGIGLLVTIIHASVRTPNLKARLNTFREEFRAVWRNYSEL 166
           S  LW+ S  LL V  A  I  L TI+HAS+RTPNLKAR NTFREEFRAVWRNYSE+
Sbjct: 153 SFALWYISSGLLRVSVALLIAHLATILHASLRTPNLKARFNTFREEFRAVWRNYSEI 209