Jatropha Genome Database

JcCB0812861.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0812861.10 - phase: 0 /partial
         (104 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G51810.1 | Symbols: ATEM1, GEA1, AT3, EM1 | EM1 (LATE EMBRYOG...   128   7e-31
AT2G40170.1 | Symbols: ATEM6, GEA6 | GEA6 (LATE EMBRYOGENESIS AB...   103   2e-23

>AT3G51810.1 | Symbols: ATEM1, GEA1, AT3, EM1 | EM1 (LATE
          EMBRYOGENESIS ABUNDANT 1) | chr3:19214818-19215461
          FORWARD
          Length = 152

 Score =  128 bits (321), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 66/85 (77%), Positives = 77/85 (90%), Gaps = 1/85 (1%)

Query: 1  MATEQ-ERAELDARARQGETVVPGGTGGKSLEAQEHLAEGRSRGGQTRREQLGTEGYKEL 59
          MA++Q  R ELD +A+QGETVVPGGTGG SLEAQEHLAEGRS+GGQTR+EQLG EGY+E+
Sbjct: 1  MASKQLSREELDEKAKQGETVVPGGTGGHSLEAQEHLAEGRSKGGQTRKEQLGHEGYQEI 60

Query: 60 GHRGGETRREQIGHEGYQEMGRKGG 84
          GH+GGE R+EQ+GHEGYQEMG KGG
Sbjct: 61 GHKGGEARKEQLGHEGYQEMGHKGG 85


>AT2G40170.1 | Symbols: ATEM6, GEA6 | GEA6 (LATE EMBRYOGENESIS
          ABUNDANT 6) | chr2:16779792-16780167 REVERSE
          Length = 92

 Score =  103 bits (256), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 57/91 (62%), Positives = 66/91 (72%), Gaps = 20/91 (21%)

Query: 1  MATEQERAELDARARQGETVVPGGTGGKSLEAQEHLAEGRSRGGQTRREQLGTEGYKELG 60
          MA++QE+ +LD RA++GETVVPGGTGGKS EAQ+HLAEGRSRGGQTR+EQLGTE      
Sbjct: 1  MASQQEKKQLDERAKKGETVVPGGTGGKSFEAQQHLAEGRSRGGQTRKEQLGTE------ 54

Query: 61 HRGGETRREQIGHEGYQEMGRKGGLSTMDKS 91
                        GYQ+MGRKGGLST DK 
Sbjct: 55 --------------GYQQMGRKGGLSTGDKP 71