Jatropha Genome Database

JcCB0800111.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0800111.10 + phase: 0 /pseudo
         (94 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G20410.1 | Symbols:  | activating signal cointegrator-related...    84   2e-17

>AT2G20410.1 | Symbols:  | activating signal cointegrator-related
          | chr2:8802561-8804194 FORWARD
          Length = 339

 Score = 83.6 bits (205), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/38 (89%), Positives = 36/38 (94%)

Query: 19 SHGNYTNPCLTMHQPWASLLVYGIKRIEGRSWPAPIRG 56
          S GNY NPCLTMHQPWASLLV+GIKRIEGRSWP+PIRG
Sbjct: 2  SRGNYKNPCLTMHQPWASLLVHGIKRIEGRSWPSPIRG 39