Jatropha Genome Database

JcCB0799991.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0799991.10 - phase: 0 /partial
         (112 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G60600.1 | Symbols: ABC4 | ABC4 (ABERRANT CHLOROPLAST DEVELOP...    97   1e-21
AT1G60600.2 | Symbols: ABC4 | ABC4 (ABERRANT CHLOROPLAST DEVELOP...    97   2e-21

>AT1G60600.1 | Symbols: ABC4 | ABC4 (ABERRANT CHLOROPLAST
           DEVELOPMENT 4); 1,4-dihydroxy-2-naphthoate
           octaprenyltransferase/ prenyltransferase |
           chr1:22324807-22326395 REVERSE
          Length = 287

 Score = 97.4 bits (241), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 46/73 (63%), Positives = 56/73 (76%)

Query: 3   VRLGTEKGSLVVKVAIVALYSLLSIFVLSNALPFTCLLLCDLTIPMGNLVVRYVEENHKD 62
           VRLGTEKG+ VV+  I  LYS+L +  L+  LP  C L+C LT+P+GNLV  YVE++HKD
Sbjct: 198 VRLGTEKGAFVVRWTIRLLYSMLLVLGLTRILPLPCTLMCFLTLPVGNLVSSYVEKHHKD 257

Query: 63  KGKIFMAKYYCVR 75
            GKIFMAKYYCVR
Sbjct: 258 NGKIFMAKYYCVR 270


>AT1G60600.2 | Symbols: ABC4 | ABC4 (ABERRANT CHLOROPLAST
           DEVELOPMENT 4); 1,4-dihydroxy-2-naphthoate
           octaprenyltransferase/ prenyltransferase |
           chr1:22324807-22326759 REVERSE
          Length = 382

 Score = 97.4 bits (241), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 46/73 (63%), Positives = 56/73 (76%)

Query: 3   VRLGTEKGSLVVKVAIVALYSLLSIFVLSNALPFTCLLLCDLTIPMGNLVVRYVEENHKD 62
           VRLGTEKG+ VV+  I  LYS+L +  L+  LP  C L+C LT+P+GNLV  YVE++HKD
Sbjct: 293 VRLGTEKGAFVVRWTIRLLYSMLLVLGLTRILPLPCTLMCFLTLPVGNLVSSYVEKHHKD 352

Query: 63  KGKIFMAKYYCVR 75
            GKIFMAKYYCVR
Sbjct: 353 NGKIFMAKYYCVR 365