Jatropha Genome Database
- JcCB0799431.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0799431.10 + phase: 2 /pseudo/partial
(226 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G23460.1 | Symbols: | polygalacturonase | chr1:8327382-83296... 286 6e-78
AT1G70500.1 | Symbols: | polygalacturonase, putative / pectinas... 273 4e-74
AT1G80170.1 | Symbols: | polygalacturonase, putative / pectinas... 167 6e-42
AT3G07970.1 | Symbols: QRT2 | QRT2 (QUARTET 2); polygalacturonas... 147 5e-36
AT1G56710.1 | Symbols: | glycoside hydrolase family 28 protein ... 142 1e-34
AT2G41850.1 | Symbols: PGAZAT, ADPG2 | PGAZAT (POLYGALACTURONASE... 140 6e-34
AT3G57510.1 | Symbols: ADPG1 | ADPG1; polygalacturonase | chr3:2... 139 1e-33
AT1G02460.1 | Symbols: | glycoside hydrolase family 28 protein ... 138 3e-33
AT4G01890.1 | Symbols: | glycoside hydrolase family 28 protein ... 131 4e-31
AT1G10640.1 | Symbols: | polygalacturonase | chr1:3515478-35178... 130 5e-31
AT5G14650.1 | Symbols: | polygalacturonase, putative / pectinas... 128 3e-30
AT3G26610.1 | Symbols: | polygalacturonase, putative / pectinas... 127 6e-30
AT1G48100.1 | Symbols: | glycoside hydrolase family 28 protein ... 127 8e-30
AT3G15720.1 | Symbols: | glycoside hydrolase family 28 protein ... 126 9e-30
AT1G60590.1 | Symbols: | polygalacturonase, putative / pectinas... 124 3e-29
AT4G35670.1 | Symbols: | glycoside hydrolase family 28 protein ... 124 5e-29
AT3G15720.2 | Symbols: | glycoside hydrolase family 28 protein ... 120 9e-28
AT2G43860.1 | Symbols: | polygalacturonase, putative / pectinas... 115 3e-26
AT1G65570.1 | Symbols: | polygalacturonase, putative / pectinas... 113 8e-26
AT2G43880.1 | Symbols: | polygalacturonase, putative / pectinas... 112 2e-25
AT2G43870.1 | Symbols: | polygalacturonase, putative / pectinas... 110 5e-25
AT4G32370.1 | Symbols: | glycoside hydrolase family 28 protein ... 110 9e-25
AT5G27530.1 | Symbols: | glycoside hydrolase family 28 protein ... 108 2e-24
AT4G32375.1 | Symbols: | glycoside hydrolase family 28 protein ... 108 2e-24
AT5G44830.1 | Symbols: | glycoside hydrolase family 28 protein ... 108 2e-24
AT3G59850.1 | Symbols: | polygalacturonase, putative / pectinas... 107 4e-24
AT1G80140.1 | Symbols: | glycoside hydrolase family 28 protein ... 106 1e-23
AT5G17200.1 | Symbols: | glycoside hydrolase family 28 protein ... 104 4e-23
AT5G39910.1 | Symbols: | glycoside hydrolase family 28 protein ... 104 6e-23
AT4G13760.1 | Symbols: | polygalacturonase | chr4:7988058-79896... 103 9e-23
AT2G43890.1 | Symbols: | polygalacturonase, putative / pectinas... 103 1e-22
AT2G33160.1 | Symbols: | glycoside hydrolase family 28 protein ... 102 1e-22
AT2G26620.1 | Symbols: | glycoside hydrolase family 28 protein ... 102 2e-22
AT5G44840.1 | Symbols: | glycoside hydrolase family 28 protein ... 102 2e-22
AT2G15470.1 | Symbols: | glycoside hydrolase family 28 protein ... 102 3e-22
AT2G15460.1 | Symbols: | glycoside hydrolase family 28 protein ... 102 3e-22
AT2G15450.1 | Symbols: | glycoside hydrolase family 28 protein ... 102 3e-22
AT1G43090.1 | Symbols: | glycoside hydrolase family 28 protein ... 102 3e-22
AT1G43100.1 | Symbols: | glycoside hydrolase family 28 protein ... 102 3e-22
AT1G02790.1 | Symbols: PGA4 | PGA4 (POLYGALACTURONASE 4); polyga... 102 3e-22
AT1G43080.1 | Symbols: | glycoside hydrolase family 28 protein ... 101 3e-22
AT1G17150.1 | Symbols: | glycoside hydrolase family 28 protein ... 101 4e-22
AT2G40310.1 | Symbols: | glycoside hydrolase family 28 protein ... 98 4e-21
AT4G18180.1 | Symbols: | glycoside hydrolase family 28 protein ... 96 2e-20
AT3G07840.1 | Symbols: | polygalacturonase, putative / pectinas... 96 2e-20
AT5G48140.1 | Symbols: | polygalacturonase, putative / pectinas... 95 4e-20
AT3G14040.1 | Symbols: | exopolygalacturonase / galacturan 1,4-... 94 8e-20
AT3G07850.1 | Symbols: | exopolygalacturonase / galacturan 1,4-... 93 1e-19
AT3G07830.1 | Symbols: | polygalacturonase, putative / pectinas... 93 1e-19
AT1G05650.1 | Symbols: | polygalacturonase, putative / pectinas... 92 2e-19
AT1G78400.1 | Symbols: | glycoside hydrolase family 28 protein ... 92 3e-19
AT4G32380.1 | Symbols: | glycoside hydrolase family 28 protein ... 91 7e-19
AT1G05660.1 | Symbols: | polygalacturonase, putative / pectinas... 89 2e-18
AT3G07820.1 | Symbols: | polygalacturonase 3 (PGA3) / pectinase... 89 2e-18
AT2G23900.1 | Symbols: | glycoside hydrolase family 28 protein ... 69 3e-12
AT3G61490.2 | Symbols: | glycoside hydrolase family 28 protein ... 68 5e-12
AT3G61490.1 | Symbols: | glycoside hydrolase family 28 protein ... 68 5e-12
AT3G62110.1 | Symbols: | glycoside hydrolase family 28 protein ... 66 1e-11
AT4G23500.1 | Symbols: | glycoside hydrolase family 28 protein ... 66 2e-11
AT3G48950.1 | Symbols: | glycoside hydrolase family 28 protein ... 66 2e-11
AT4G23820.1 | Symbols: | glycoside hydrolase family 28 protein ... 64 7e-11
AT4G33440.1 | Symbols: | glycoside hydrolase family 28 protein ... 61 5e-10
AT5G41870.1 | Symbols: | glycoside hydrolase family 28 protein ... 60 9e-10
AT3G16850.1 | Symbols: | glycoside hydrolase family 28 protein ... 57 1e-08
AT1G19170.1 | Symbols: | glycoside hydrolase family 28 protein ... 55 3e-08
AT3G06770.2 | Symbols: | glycoside hydrolase family 28 protein ... 54 7e-08
AT3G06770.1 | Symbols: | glycoside hydrolase family 28 protein ... 54 8e-08
AT3G06770.3 | Symbols: | glycoside hydrolase family 28 protein ... 54 8e-08
AT3G57790.1 | Symbols: | glycoside hydrolase family 28 protein ... 50 1e-06
AT5G49215.1 | Symbols: | glycoside hydrolase family 28 protein ... 49 3e-06
AT5G49215.2 | Symbols: | glycoside hydrolase family 28 protein ... 49 3e-06
>AT1G23460.1 | Symbols: | polygalacturonase | chr1:8327382-8329622
FORWARD
Length = 460
Score = 286 bits (733), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 134/162 (82%), Positives = 150/162 (92%)
Query: 52 IQIDGTIVAPDEPNNWDPKFPRQWLDFTKLQAVIFQGNGVIDGSGSKWWASSCKKNKSNP 111
IQIDGTIVAPDEP+NWD KF R WL+F+KL+ V+FQG GVIDGSGSKWWA+SCKKNKSNP
Sbjct: 126 IQIDGTIVAPDEPSNWDSKFQRIWLEFSKLKGVVFQGKGVIDGSGSKWWAASCKKNKSNP 185
Query: 112 CRGAPTALTIDSSSSVKVRGLTIQNSQQMNFVISRSASVRVSQVLVSAPEDSPNTDGIHI 171
C+ APTALTI+SSS VKV GLTIQNSQQMNF+I+RS SVRVS+V+VS+P DSPNTDGIHI
Sbjct: 186 CKSAPTALTIESSSGVKVSGLTIQNSQQMNFIIARSDSVRVSKVMVSSPGDSPNTDGIHI 245
Query: 172 TGSTNVVLQDCKIGTGDDCISIVNGSSAIKMKNIYCGPGHGV 213
TGSTNV+LQDCKIGTGDDC+SIVN SS IKMKNIYCGPGHG+
Sbjct: 246 TGSTNVILQDCKIGTGDDCVSIVNASSNIKMKNIYCGPGHGI 287
>AT1G70500.1 | Symbols: | polygalacturonase, putative / pectinase,
putative | chr1:26566579-26568729 REVERSE
Length = 468
Score = 273 bits (699), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 125/162 (77%), Positives = 146/162 (90%)
Query: 52 IQIDGTIVAPDEPNNWDPKFPRQWLDFTKLQAVIFQGNGVIDGSGSKWWASSCKKNKSNP 111
IQIDGTI+APDEP+ WDPKFPR WL F+KLQ V+FQGNGVIDGSG+KWWA+SCKKNKSNP
Sbjct: 126 IQIDGTIIAPDEPSQWDPKFPRNWLQFSKLQGVVFQGNGVIDGSGTKWWAASCKKNKSNP 185
Query: 112 CRGAPTALTIDSSSSVKVRGLTIQNSQQMNFVISRSASVRVSQVLVSAPEDSPNTDGIHI 171
C GAPTALTI SSS+V VRGLTI+NSQQM+ +I RS +VR+S+V+V++P DSPNTDGIHI
Sbjct: 186 CVGAPTALTIYSSSNVYVRGLTIRNSQQMHLIIQRSTTVRISRVMVTSPGDSPNTDGIHI 245
Query: 172 TGSTNVVLQDCKIGTGDDCISIVNGSSAIKMKNIYCGPGHGV 213
T ST+VV+QD KI TGDDC+SIVNGS+ IKMK IYCGPGHG+
Sbjct: 246 TASTDVVVQDSKISTGDDCVSIVNGSAKIKMKRIYCGPGHGI 287
>AT1G80170.1 | Symbols: | polygalacturonase, putative / pectinase,
putative | chr1:30153646-30155683 REVERSE
Length = 444
Score = 167 bits (422), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 77/162 (47%), Positives = 107/162 (66%)
Query: 52 IQIDGTIVAPDEPNNWDPKFPRQWLDFTKLQAVIFQGNGVIDGSGSKWWASSCKKNKSNP 111
+QI GTI+AP++P+ W+ R+WL F L + +G G ++G G +WW SCK N SNP
Sbjct: 113 LQISGTIIAPNDPDVWEGLNRRKWLYFHGLSRLTVEGGGTVNGMGQEWWERSCKHNHSNP 172
Query: 112 CRGAPTALTIDSSSSVKVRGLTIQNSQQMNFVISRSASVRVSQVLVSAPEDSPNTDGIHI 171
CRGAPTALT +++V L + +SQQM+ ++ V +S + V AP SPNTDGIHI
Sbjct: 173 CRGAPTALTFHKCKNMRVENLNVIDSQQMHIALTSCRRVTISGLKVIAPATSPNTDGIHI 232
Query: 172 TGSTNVVLQDCKIGTGDDCISIVNGSSAIKMKNIYCGPGHGV 213
+ S +V+ + + TGDDCISIV S+ I + NI CGPGHG+
Sbjct: 233 SVSRGIVIDNTTVSTGDDCISIVKNSTQISISNIICGPGHGI 274
>AT3G07970.1 | Symbols: QRT2 | QRT2 (QUARTET 2); polygalacturonase |
chr3:2541006-2543370 FORWARD
Length = 439
Score = 147 bits (371), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 67/162 (41%), Positives = 105/162 (64%), Gaps = 2/162 (1%)
Query: 52 IQIDGTIVAPDEPNNWDPKFPRQWLDFTKLQAVIFQGNGVIDGSGSKWWASSCKKNKSNP 111
+I G I A + P+++ + R W+ F + + +G G IDG+G WW SCK N P
Sbjct: 131 FKIYGRIEAWENPSDYKER--RHWIVFENVNNLRVEGGGRIDGNGHIWWPKSCKINPQLP 188
Query: 112 CRGAPTALTIDSSSSVKVRGLTIQNSQQMNFVISRSASVRVSQVLVSAPEDSPNTDGIHI 171
C GAPTA+T ++++V + ++N+QQM+ +V+ ++V++P DSPNTDGIH+
Sbjct: 189 CLGAPTAVTFVECNNLRVSNIRLENAQQMHLTFQDCKNVKALNLMVTSPADSPNTDGIHV 248
Query: 172 TGSTNVVLQDCKIGTGDDCISIVNGSSAIKMKNIYCGPGHGV 213
+G+ N+++QD + TGDDCISIV+GS ++ I CGPGHG+
Sbjct: 249 SGTQNILIQDSIVRTGDDCISIVSGSENVRATGITCGPGHGI 290
>AT1G56710.1 | Symbols: | glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein |
chr1:21258206-21259922 REVERSE
Length = 434
Score = 142 bits (359), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 70/169 (41%), Positives = 101/169 (59%), Gaps = 8/169 (4%)
Query: 52 IQIDGTIVAPDEPNNWDPKFPRQWLDFTKLQAVIFQGNGVIDGSGSKWWASSCKKNK--- 108
+QIDG IV+PD P +W + RQW+ F ++ + QG+GVI+G G KWW CK +K
Sbjct: 110 LQIDGFIVSPDGPRSWPSNYQRQWMMFYRVNGLSIQGSGVINGRGQKWWNLPCKPHKGLN 169
Query: 109 ----SNPCRGAPTALTIDSSSSVKVRGLTIQNSQQMNFVISRSASVRVSQVLVSAPEDSP 164
+ PC +P A+ + SS V+++G+ NS Q + + V V V++ AP SP
Sbjct: 170 GTTQTGPCD-SPVAIRLFQSSKVRIQGINFMNSAQFHVRFDNCSDVVVDSVIIKAPASSP 228
Query: 165 NTDGIHITGSTNVVLQDCKIGTGDDCISIVNGSSAIKMKNIYCGPGHGV 213
NTDGIHI + NV +++ I GDDCISI G + +KN+ CGP HG+
Sbjct: 229 NTDGIHIENTHNVQIRNSMISNGDDCISIGAGCFNVDIKNVTCGPSHGI 277
>AT2G41850.1 | Symbols: PGAZAT, ADPG2 | PGAZAT (POLYGALACTURONASE
ABSCISSION ZONE A. THALIANA); polygalacturonase |
chr2:17461918-17464059 REVERSE
Length = 433
Score = 140 bits (353), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 76/167 (45%), Positives = 114/167 (68%), Gaps = 4/167 (2%)
Query: 49 ITPIQIDGTIVAPDEPNNWDPKFPRQWLDFTKLQAVIFQG--NGVIDGSGSKWWASSCKK 106
I +QI GT+ A + +++ K +W+ F + + G GV+DG+G WW +SCK+
Sbjct: 125 ILTVQIFGTLSASQKRSDY--KDISKWIMFDGVNNLSVDGGDTGVVDGNGETWWQNSCKR 182
Query: 107 NKSNPCRGAPTALTIDSSSSVKVRGLTIQNSQQMNFVISRSASVRVSQVLVSAPEDSPNT 166
NK+ PC APTALT +S S+ V+ L ++N+QQ+ I + ++V+VS V+V+AP DSPNT
Sbjct: 183 NKAKPCTKAPTALTFYNSKSLIVKNLKVRNAQQIQISIEKCSNVQVSNVVVTAPADSPNT 242
Query: 167 DGIHITGSTNVVLQDCKIGTGDDCISIVNGSSAIKMKNIYCGPGHGV 213
DGIHIT + N+ + + IGTGDDCISI +GS +++ +I CGPGHG+
Sbjct: 243 DGIHITNTQNIRVSESIIGTGDDCISIESGSQNVQINDITCGPGHGI 289
>AT3G57510.1 | Symbols: ADPG1 | ADPG1; polygalacturonase |
chr3:21283546-21285842 REVERSE
Length = 431
Score = 139 bits (350), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 69/163 (42%), Positives = 105/163 (64%), Gaps = 4/163 (2%)
Query: 53 QIDGTIVAPDEPNNWDPKFPRQWLDFTKLQAVIFQG--NGVIDGSGSKWWASSCKKNKSN 110
QI GT+ A + +++ K WL + + G G+I+G+G WW +SCK +KS
Sbjct: 129 QILGTLSASTKRSDYKDK--NHWLILEDVNNLSIDGGSTGIINGNGKTWWQNSCKIDKSK 186
Query: 111 PCRGAPTALTIDSSSSVKVRGLTIQNSQQMNFVISRSASVRVSQVLVSAPEDSPNTDGIH 170
PC APTALT+ + ++ V+ L ++N+QQ+ I + V VS V ++AP DSPNTDGIH
Sbjct: 187 PCTKAPTALTLYNLKNLNVKNLRVKNAQQIQISIEKCNKVEVSNVEITAPGDSPNTDGIH 246
Query: 171 ITGSTNVVLQDCKIGTGDDCISIVNGSSAIKMKNIYCGPGHGV 213
IT + N+ + + IGTGDDCISI +G+ +++ ++ CGPGHG+
Sbjct: 247 ITNTQNIRVSNSDIGTGDDCISIEDGTQNLQIFDLTCGPGHGI 289
>AT1G02460.1 | Symbols: | glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein |
chr1:504897-507099 REVERSE
Length = 491
Score = 138 bits (347), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/172 (43%), Positives = 101/172 (58%), Gaps = 11/172 (6%)
Query: 52 IQIDGTIVAPDEPNNWDPKF-PRQWLDFTKLQAVIFQGNGVIDGSGSKWWASSCKKNKS- 109
Q+DGTIV PD P +W RQWL F ++ + +G GVIDG G KWW CK ++S
Sbjct: 151 FQVDGTIVTPDGPESWPSNISKRQWLVFYRVNGMALKGEGVIDGRGQKWWDLPCKPHRSV 210
Query: 110 -------NPCRGAPTALTIDSSSSVKVRGLTIQNSQQMNFVISRSASVRVSQVLVSAPED 162
PC +P AL SS+++V GL I+NS Q +F V V + ++AP
Sbjct: 211 NKSAIVTGPCD-SPIALRFFMSSNLRVEGLQIKNSPQFHFRFDGCQGVHVESLHITAPPL 269
Query: 163 SPNTDGIHITGSTNVVLQDCKIGTGDDCISIVNGSSAIKMKNIYCGP-GHGV 213
SPNTDGIHI S +V + + I GDDC+SI +GS + ++N+ CGP GHG+
Sbjct: 270 SPNTDGIHIENSNSVTIYNSIISNGDDCVSIGSGSYDVDIRNLTCGPGGHGI 321
>AT4G01890.1 | Symbols: | glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein |
chr4:816210-818428 FORWARD
Length = 468
Score = 131 bits (329), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 100/172 (58%), Gaps = 11/172 (6%)
Query: 52 IQIDGTIVAPDEPNNWDPKF-PRQWLDFTKLQAVIFQGNGVIDGSGSKWWASSCKKNKSN 110
Q+DGTIV D P +W RQWL F ++ + QG GVIDG G WW CK ++ N
Sbjct: 128 FQVDGTIVPRDGPKSWPSSLNKRQWLAFYRINGMALQGAGVIDGRGQNWWDLPCKPHQQN 187
Query: 111 --------PCRGAPTALTIDSSSSVKVRGLTIQNSQQMNFVISRSASVRVSQVLVSAPED 162
PC +P AL SS+V V+GL+I+NS Q++ + V ++ + + +P
Sbjct: 188 VNKTKLAGPCE-SPAALRFFMSSNVIVKGLSIKNSPQVHLKLDGCHVVHINSLRIISPPA 246
Query: 163 SPNTDGIHITGSTNVVLQDCKIGTGDDCISIVNGSSAIKMKNIYCGP-GHGV 213
SPNTDGIHI S +V + + I GDDC+SI G+ I ++NI CGP GHG+
Sbjct: 247 SPNTDGIHIENSNSVEIYNSVISNGDDCVSIGPGAYDIDIRNITCGPGGHGI 298
>AT1G10640.1 | Symbols: | polygalacturonase | chr1:3515478-3517807
REVERSE
Length = 532
Score = 130 bits (328), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 75/187 (40%), Positives = 98/187 (52%), Gaps = 27/187 (14%)
Query: 53 QIDGTIVAPDEPNNWDPKFPRQWLDFTKLQAVIFQGNGVIDGSGSKWWA----------- 101
Q+DGTI+AP + W K W+DFTKL+ + QG GVIDG GS WW
Sbjct: 180 QLDGTIIAPTDSKTWG-KGLMWWIDFTKLKGIKVQGKGVIDGRGSGWWQQDSPFIDSDTK 238
Query: 102 ------SSCKKNKSNPCRGA---------PTALTIDSSSSVKVRGLTIQNSQQMNFVISR 146
+S +N P R PTAL S V+V G+TIQNS Q +
Sbjct: 239 LIVPLNNSANQNPPMPIRSELDERMPSIKPTALRFSGSFGVEVTGITIQNSPQCHLKFDD 298
Query: 147 SASVRVSQVLVSAPEDSPNTDGIHITGSTNVVLQDCKIGTGDDCISIVNGSSAIKMKNIY 206
V V + VS+P DSPNTDGIH+ + +V++ + GDDCISI G S + + N+
Sbjct: 299 CVGVVVHDIAVSSPGDSPNTDGIHLQNTKDVLIHSTTLACGDDCISIQTGCSNVFVHNVN 358
Query: 207 CGPGHGV 213
CGPGHG+
Sbjct: 359 CGPGHGI 365
>AT5G14650.1 | Symbols: | polygalacturonase, putative / pectinase,
putative | chr5:4724509-4726328 FORWARD
Length = 435
Score = 128 bits (322), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 67/162 (41%), Positives = 90/162 (55%), Gaps = 4/162 (2%)
Query: 52 IQIDGTIVAPDEPNNWDPKFPRQWLDFTKLQAVIFQGNGVIDGSGSKWWASSCKKNKSNP 111
Q++G I+AP + W QW++F LQ + +G G+IDG GS WW
Sbjct: 111 FQLEGKIIAPTSASAWGSGL-LQWIEFKALQGITIKGKGIIDGRGSVWWNDMMGTKMP-- 167
Query: 112 CRGAPTALTIDSSSSVKVRGLTIQNSQQMNFVISRSASVRVSQVLVSAPEDSPNTDGIHI 171
R PTAL S+ V V G+TIQNS Q + S++VS S+P DSPNTDGIH+
Sbjct: 168 -RTKPTALRFYGSNGVTVSGITIQNSPQTHLKFDNCISIQVSDFTTSSPGDSPNTDGIHL 226
Query: 172 TGSTNVVLQDCKIGTGDDCISIVNGSSAIKMKNIYCGPGHGV 213
S + V+ + GDDCISI G S I + ++ CGPGHG+
Sbjct: 227 QNSQDAVIYRSTLACGDDCISIQTGCSNINIHDVDCGPGHGI 268
>AT3G26610.1 | Symbols: | polygalacturonase, putative / pectinase,
putative | chr3:9777025-9780267 FORWARD
Length = 470
Score = 127 bits (319), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 101/168 (60%), Gaps = 5/168 (2%)
Query: 50 TPIQIDGTIVAPDEPNNWDPKFPRQWLDFTKLQAVIFQGNGVIDGSGSKWW----ASSCK 105
T +QI+G +VAP++ +W QWL+F + + QG+G ++G G WW +
Sbjct: 124 TVVQIEGILVAPEKIGSWPNSSLFQWLNFKWVSHLTIQGSGTLNGRGYNWWNLDTYQTQT 183
Query: 106 KNKSNPCRGAPTALTIDSSSSVKVRGLTIQNSQQMNFVISRSASVRVSQVLVSAPEDSPN 165
+NK P PTAL SS++V VR ++I NS + S V+V+ + +S+PE+SPN
Sbjct: 184 RNKYIPPM-KPTALRFYSSNNVTVRDISIVNSPLCHLKFDDSDGVKVNNITISSPENSPN 242
Query: 166 TDGIHITGSTNVVLQDCKIGTGDDCISIVNGSSAIKMKNIYCGPGHGV 213
TDGIH+ + NV +Q I GDDC+SI GSS + + +I CGPGHG+
Sbjct: 243 TDGIHLQNTRNVEIQHSNIACGDDCVSIQTGSSNVHIHHINCGPGHGI 290
>AT1G48100.1 | Symbols: | glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein |
chr1:17766921-17769625 FORWARD
Length = 475
Score = 127 bits (318), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 99/170 (58%), Gaps = 9/170 (5%)
Query: 52 IQIDGTIVAPDEPNNWDPKFPR-QWLDFTKLQAVIFQGNGVIDGSGSKWWASSCKKNK-- 108
Q+DG ++ PD P W K + QWL F +L F G G ++G+G KWW CK ++
Sbjct: 139 FQLDGVLMPPDGPEEWPEKDNKNQWLVFYRLDGFTFSGKGTVEGNGQKWWDLPCKPHRGP 198
Query: 109 -----SNPCRGAPTALTIDSSSSVKVRGLTIQNSQQMNFVISRSASVRVSQVLVSAPEDS 163
S PC +PT + S++++V+GL IQNS Q + V ++++ +S+P+ S
Sbjct: 199 DGSSSSGPC-ASPTMIRFFMSNNIEVKGLRIQNSPQFHMKFDGCQGVLINEIQISSPKLS 257
Query: 164 PNTDGIHITGSTNVVLQDCKIGTGDDCISIVNGSSAIKMKNIYCGPGHGV 213
PNTDGIH+ + +V + + + GDDCISI G S + ++ + CGP HG+
Sbjct: 258 PNTDGIHLGNTRSVGIYNSVVSNGDDCISIGTGCSDVDIQGVTCGPSHGI 307
>AT3G15720.1 | Symbols: | glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein |
chr3:5325329-5327457 REVERSE
Length = 456
Score = 126 bits (317), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 67/162 (41%), Positives = 99/162 (61%), Gaps = 11/162 (6%)
Query: 52 IQIDGTIVAPDEPNNWDPKFPRQWLDFTKLQAVIFQGNGVIDGSGSKWWASSCKKNKSNP 111
+Q+ G +VAP + NW QW+ FT ++ ++ +G+G I+G GS WW +
Sbjct: 85 VQMLGKLVAPSK-GNWKGD-KDQWILFTDIEGLVIEGDGEINGQGSSWWEHKGSR----- 137
Query: 112 CRGAPTALTIDSSSSVKVRGLTIQNSQQMNFVISRSASVRVSQVLVSAPEDSPNTDGIHI 171
PTAL S +++++ GLT +S + IS V +S + ++APE SPNTDGI +
Sbjct: 138 ----PTALKFRSCNNLRLSGLTHLDSPMAHIHISECNYVTISSLRINAPESSPNTDGIDV 193
Query: 172 TGSTNVVLQDCKIGTGDDCISIVNGSSAIKMKNIYCGPGHGV 213
S+NVV+QDC I TGDDCI+I +G+S I + I CGPGHG+
Sbjct: 194 GASSNVVIQDCIIATGDDCIAINSGTSNIHISGIDCGPGHGI 235
>AT1G60590.1 | Symbols: | polygalacturonase, putative / pectinase,
putative | chr1:22314426-22316867 REVERSE
Length = 540
Score = 124 bits (312), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 75/202 (37%), Positives = 101/202 (50%), Gaps = 30/202 (14%)
Query: 53 QIDGTIVAPDEPNNWDPKFPRQWLDFTKLQAVIFQGNGVIDGSGSKWWA----------- 101
Q++G IVAP + +W W++FTKL + QGNGVIDG G+ WW
Sbjct: 184 QLEGMIVAPTDTESWGGGL-MWWIEFTKLSGITIQGNGVIDGRGTVWWQQDYLSDYPIDD 242
Query: 102 ---------SSCKKNKSNPCRGA---------PTALTIDSSSSVKVRGLTIQNSQQMNFV 143
+S ++ P R PTAL S V V G+TIQNS Q +
Sbjct: 243 DFKLIVPLNNSVQERPPMPIRSELNWRMPSIKPTALRFYGSIDVTVTGITIQNSPQCHLK 302
Query: 144 ISRSASVRVSQVLVSAPEDSPNTDGIHITGSTNVVLQDCKIGTGDDCISIVNGSSAIKMK 203
V V V VS+P DSPNTDGIH+ + +V++ + GDDCISI G S + +
Sbjct: 303 FDNCVKVLVHDVNVSSPGDSPNTDGIHLQNTRDVMIHTTTLACGDDCISIQTGCSNVYVH 362
Query: 204 NIYCGPGHGVRYTNTICDSLKS 225
N+ CGPGHG+ + DS K+
Sbjct: 363 NVNCGPGHGISIGSLGKDSTKA 384
>AT4G35670.1 | Symbols: | glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein |
chr4:16914996-16917201 FORWARD
Length = 394
Score = 124 bits (311), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 66/162 (40%), Positives = 97/162 (59%), Gaps = 6/162 (3%)
Query: 52 IQIDGTIVAPDEPNNWDPKFPRQWLDFTKLQAVIFQGNGVIDGSGSKWWASSCKKNKSNP 111
+Q+DGTIVAP + W R W+ F+ + +I G+G ID GS +W + K ++
Sbjct: 86 VQLDGTIVAPSDKFAWSDPISRMWIKFSTVSGLIIVGSGTIDSRGSSFWELNLKASQR-- 143
Query: 112 CRGAPTALTIDSSSSVKVRGLTIQNSQQMNFVISRSASVRVSQVLVSAPEDSPNTDGIHI 171
PTAL I ++++ G+T +S + + I +V +S + + APE SPNTDGI I
Sbjct: 144 ----PTALHISKCDNLRINGITSIDSPKNHISIKTCNTVAISNINLFAPETSPNTDGIDI 199
Query: 172 TGSTNVVLQDCKIGTGDDCISIVNGSSAIKMKNIYCGPGHGV 213
+ STN+ + D I TGDDCI+I +GSS I + I CGPGHG+
Sbjct: 200 SDSTNINIFDSTIQTGDDCIAINSGSSNINITGINCGPGHGI 241
>AT3G15720.2 | Symbols: | glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein |
chr3:5325329-5327617 REVERSE
Length = 452
Score = 120 bits (300), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 66/162 (40%), Positives = 98/162 (60%), Gaps = 14/162 (8%)
Query: 52 IQIDGTIVAPDEPNNWDPKFPRQWLDFTKLQAVIFQGNGVIDGSGSKWWASSCKKNKSNP 111
+Q+ G +VAP + NW QW+ FT ++ ++ +G+G I+G GS WW + S P
Sbjct: 84 VQMLGKLVAPSK-GNWKGD-KDQWILFTDIEGLVIEGDGEINGQGSSWW----EHKGSRP 137
Query: 112 CRGAPTALTIDSSSSVKVRGLTIQNSQQMNFVISRSASVRVSQVLVSAPEDSPNTDGIHI 171
T S +++++ GLT +S + IS V +S + ++APE SPNTDGI +
Sbjct: 138 --------TFRSCNNLRLSGLTHLDSPMAHIHISECNYVTISSLRINAPESSPNTDGIDV 189
Query: 172 TGSTNVVLQDCKIGTGDDCISIVNGSSAIKMKNIYCGPGHGV 213
S+NVV+QDC I TGDDCI+I +G+S I + I CGPGHG+
Sbjct: 190 GASSNVVIQDCIIATGDDCIAINSGTSNIHISGIDCGPGHGI 231
>AT2G43860.1 | Symbols: | polygalacturonase, putative / pectinase,
putative | chr2:18162945-18164428 REVERSE
Length = 405
Score = 115 bits (287), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/162 (40%), Positives = 97/162 (59%), Gaps = 5/162 (3%)
Query: 52 IQIDGTIVAPDEPNNWDPKFPRQWLDFTKLQAVIFQGNGVIDGSGSKWWASSCKKNKSNP 111
I+I G+IVAP++ + W+ F + V G G++D G+ W CK N +
Sbjct: 94 IRIAGSIVAPEDFRIIASS--KHWIWFEDVTDVSIYG-GILDAQGTSLW--KCKNNGGHN 148
Query: 112 CRGAPTALTIDSSSSVKVRGLTIQNSQQMNFVISRSASVRVSQVLVSAPEDSPNTDGIHI 171
C +L S+++K+ GLT NSQ+ + VI S +V + V VSA E+SPNTDGIH+
Sbjct: 149 CPTGAKSLVFSGSNNIKISGLTSINSQKFHIVIDNSNNVNIDGVKVSADENSPNTDGIHV 208
Query: 172 TGSTNVVLQDCKIGTGDDCISIVNGSSAIKMKNIYCGPGHGV 213
S +V + + +IGTGDDCISI GS+ + ++ I CGPGHG+
Sbjct: 209 ESSHSVHITNSRIGTGDDCISIGPGSTNVFIQTIRCGPGHGI 250
>AT1G65570.1 | Symbols: | polygalacturonase, putative / pectinase,
putative | chr1:24374098-24375846 REVERSE
Length = 397
Score = 113 bits (283), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 64/162 (39%), Positives = 96/162 (59%), Gaps = 6/162 (3%)
Query: 52 IQIDGTIVAPDEPNNWDPKFPRQWLDFTKLQAVIFQGNGVIDGSGSKWWASSCKKNKSNP 111
++IDGT++ P + + K W F+ + V G G D GS W SCK N N
Sbjct: 93 LRIDGTLIGPQDYSLLGKK--ENWFSFSGVHNVTVLG-GSFDAKGSTLW--SCKANGYNC 147
Query: 112 CRGAPTALTIDSSSSVKVRGLTIQNSQQMNFVISRSASVRVSQVLVSAPEDSPNTDGIHI 171
GA T +DS++ VK++G+ NSQ + I+R ++++ V + AP++SPNTDGIHI
Sbjct: 148 PEGATTLRFMDSNN-VKIKGVLSLNSQLFHIAINRCRNIKIEDVRIIAPDESPNTDGIHI 206
Query: 172 TGSTNVVLQDCKIGTGDDCISIVNGSSAIKMKNIYCGPGHGV 213
ST++ +++ I TGDDCISI G+ + + I CGPGHG+
Sbjct: 207 QLSTDIEVRNASIKTGDDCISIGPGTKNLMVDGITCGPGHGI 248
>AT2G43880.1 | Symbols: | polygalacturonase, putative / pectinase,
putative | chr2:18173034-18174482 FORWARD
Length = 394
Score = 112 bits (279), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/165 (38%), Positives = 96/165 (58%), Gaps = 6/165 (3%)
Query: 49 ITPIQIDGTIVAPDEPNNWDPKFPRQWLDFTKLQAVIFQGNGVIDGSGSKWWASSCKKNK 108
I + DGT+VAP N WD W+ F K+ + G G ID G+ +W SC+K
Sbjct: 87 IITFKNDGTLVAP--ANYWDIGNSGYWILFAKVNRISVYG-GTIDARGAGYW--SCRKKG 141
Query: 109 SNPCRGAPTALTIDSSSSVKVRGLTIQNSQQMNFVISRSASVRVSQVLVSAPEDSPNTDG 168
S+ +GA +++ ++V + GL+ NSQ M+ + S++VR+ V + AP SPNTDG
Sbjct: 142 SHCPQGA-RSISFSWCNNVLLSGLSSFNSQNMHVTVHHSSNVRIENVRIRAPSGSPNTDG 200
Query: 169 IHITGSTNVVLQDCKIGTGDDCISIVNGSSAIKMKNIYCGPGHGV 213
IH+ S+ V + I TGDDCI++ GS I ++ + CGPGHG+
Sbjct: 201 IHVQSSSGVTISGGTIATGDDCIALSQGSRNIWIERVNCGPGHGI 245
>AT2G43870.1 | Symbols: | polygalacturonase, putative / pectinase,
putative | chr2:18166615-18168264 REVERSE
Length = 384
Score = 110 bits (276), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 103/177 (58%), Gaps = 12/177 (6%)
Query: 52 IQIDGTIVAPDEPN---NWDPKFPRQWLDFTKLQAVIFQGNGVIDGSGSKWWASSCKKNK 108
+IDGT+VAP + N D W+ F L + G GV+D G+ W CKK+
Sbjct: 82 FRIDGTLVAPADYRVIGNED-----YWIFFQHLDGITVYG-GVLDARGASLW--DCKKSG 133
Query: 109 SNPCRGAPTALTIDSSSSVKVRGLTIQNSQQMNFVISRSASVRVSQVLVSAPEDSPNTDG 168
N C T + SSS+V V GLT NSQ + VI+ +V++ V V A +SPNTDG
Sbjct: 134 KN-CPSGATTIGFQSSSNVVVSGLTSLNSQMFHVVINGCNNVKLQGVKVLAAGNSPNTDG 192
Query: 169 IHITGSTNVVLQDCKIGTGDDCISIVNGSSAIKMKNIYCGPGHGVRYTNTICDSLKS 225
IH+ S++V + + KI TGDDC+SI G++ + ++N+ CGPGHG+ + DS++S
Sbjct: 193 IHVQSSSSVSIFNTKISTGDDCVSIGPGTNGLWIENVACGPGHGISIGSLGKDSVES 249
>AT4G32370.1 | Symbols: | glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein |
chr4:15625558-15627517 FORWARD
Length = 342
Score = 110 bits (274), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 88/165 (53%), Gaps = 10/165 (6%)
Query: 52 IQIDGTIVAPDEPNNWDPKFPRQWLDFTKLQAVIFQGNGVIDGSGSKWWASSCKKNKSNP 111
IQIDG + P +P W K R WL F ++ ++ G+GV++ G WW KS
Sbjct: 98 IQIDGKLEGPRKPIYWKNKENRSWLGFKDVEGLVINGSGVLNPHGEAWW-------KSVS 150
Query: 112 CRGAPTALTIDSSSSVKVRGLTIQNSQQMNFVISRSASVRVSQVLVSAPEDSPNTDGIHI 171
PT ++ S + GL NS + + I + +S + +SAPEDSPNTDGI+I
Sbjct: 151 LSKRPTTISFASCMDIVYNGLHHINSPRNHISIYGCTNATLSNLDISAPEDSPNTDGINI 210
Query: 172 TGSTNVVLQDCKIGTGDDCISIV---NGSSAIKMKNIYCGPGHGV 213
S + + D I TGDDC++I GSS I + + CGPGHG+
Sbjct: 211 CLSHRIQILDSSIQTGDDCVAITGGRGGSSDINITGVACGPGHGI 255
>AT5G27530.1 | Symbols: | glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein |
chr5:9717503-9721097 FORWARD
Length = 458
Score = 108 bits (271), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 93/162 (57%), Gaps = 16/162 (9%)
Query: 52 IQIDGTIVAPDEPNNWDPKFPRQWLDFTKLQAVIFQGNGVIDGSGSKWWASSCKKNKSNP 111
+Q+DG IVAP +W + W+ F+ + ++ G+G I+G GS +W
Sbjct: 115 LQLDGIIVAPSNITSWSNPKSQTWISFSGVPGLMIDGSGTINGRGSSFWE---------- 164
Query: 112 CRGAPTALTIDSSSSVKVRGLTIQNSQQMNFVISRSASVRVSQVLVSAPEDSPNTDGIHI 171
AL I + +++ + G+T +S + + I V +S++ + APE+SPNTDGI I
Sbjct: 165 ------ALHICNCNNLTINGITSIDSPKSHISIKNCHYVAISKINILAPENSPNTDGIDI 218
Query: 172 TGSTNVVLQDCKIGTGDDCISIVNGSSAIKMKNIYCGPGHGV 213
+ STNV + D I TGDDCI+I GSS+I + + CGPGHG+
Sbjct: 219 SYSTNVNIFDSTIQTGDDCIAINTGSSSINITQVNCGPGHGI 260
>AT4G32375.1 | Symbols: | glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein |
chr4:15628873-15631596 FORWARD
Length = 486
Score = 108 bits (271), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 88/162 (54%), Gaps = 7/162 (4%)
Query: 52 IQIDGTIVAPDEPNNWDPKFPRQWLDFTKLQAVIFQGNGVIDGSGSKWWASSCKKNKSNP 111
IQIDG + AP W + WL FT ++ ++ G+G++ G WW+S ++
Sbjct: 51 IQIDGKLEAPKMVREWGNYESKCWLCFTNVKGLVLNGSGILHPHGEAWWSSIEHSHR--- 107
Query: 112 CRGAPTALTIDSSSSVKVRGLTIQNSQQMNFVISRSASVRVSQVLVSAPEDSPNTDGIHI 171
P + SS++ GLT NS + + I +V +S + AP+DSPNTDGI I
Sbjct: 108 ----PRTIGFSGSSNILYNGLTQMNSPKNHISILDCTNVTLSNFHLIAPKDSPNTDGIDI 163
Query: 172 TGSTNVVLQDCKIGTGDDCISIVNGSSAIKMKNIYCGPGHGV 213
S N+ + + I TGDDCI+I GS I + ++ CGPGHG+
Sbjct: 164 AHSNNIRIFNSSIQTGDDCIAINGGSYDINITHVACGPGHGI 205
>AT5G44830.1 | Symbols: | glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein |
chr5:18100128-18101885 REVERSE
Length = 332
Score = 108 bits (271), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 95/175 (54%), Gaps = 16/175 (9%)
Query: 52 IQIDGTIVAPDEPNNWDPKFPRQWLDFTKLQAVIFQGNGVIDGSGSKWWASSCKKNKSNP 111
++ DG IVAP W +W+ F ++ + G+G I G GS +W
Sbjct: 37 VKFDGKIVAPINKAAWSESKLFRWVSFKEIIGLTVNGSGTIHGRGSSFWKQ--------- 87
Query: 112 CRGAPTALTIDSSSSVKVRGLTIQNSQQMNFVISRSASVRVSQVLVSAPEDSPNTDGIHI 171
L + +K+ G+T NS + + IS V+++++ + APEDSPNTDGI+I
Sbjct: 88 -------LHFQRCNDLKIIGITSFNSPRNHISISECKRVQLTKIKLVAPEDSPNTDGINI 140
Query: 172 TGSTNVVLQDCKIGTGDDCISIVNGSSAIKMKNIYCGPGHGVRYTNTICDSLKSI 226
+GS++V + D IGTGDDC++I NGS I + + CGPGHG+ + D +SI
Sbjct: 141 SGSSDVDVYDTFIGTGDDCVAINNGSVNINITRMNCGPGHGISVGSLGRDGEESI 195
>AT3G59850.1 | Symbols: | polygalacturonase, putative / pectinase,
putative | chr3:22109343-22111566 REVERSE
Length = 388
Score = 107 bits (268), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 64/162 (39%), Positives = 96/162 (59%), Gaps = 6/162 (3%)
Query: 52 IQIDGTIVAPDEPNNWDPKFPRQWLDFTKLQAVIFQGNGVIDGSGSKWWASSCKKNKSNP 111
+I GT+VAP + + W+ F L + G GV+D G+ W SCKK+ N
Sbjct: 84 FRIQGTLVAPSDYRVIGKE--NYWILFQHLDGISVYG-GVLDAQGASLW--SCKKSGKN- 137
Query: 112 CRGAPTALTIDSSSSVKVRGLTIQNSQQMNFVISRSASVRVSQVLVSAPEDSPNTDGIHI 171
C T++ SS +V + GLT NSQ + I+ ++V++ V VSA +SPNTDGIH+
Sbjct: 138 CPSGATSIGFQSSRNVVISGLTSLNSQMFHVAINGCSNVKLDGVKVSADGNSPNTDGIHV 197
Query: 172 TGSTNVVLQDCKIGTGDDCISIVNGSSAIKMKNIYCGPGHGV 213
S+ V + + KI TGDDC+SI G++ + ++N+ CGPGHG+
Sbjct: 198 QSSSTVSILNSKISTGDDCVSIGPGTNGLWIENVACGPGHGI 239
>AT1G80140.1 | Symbols: | glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein |
chr1:30146611-30148180 FORWARD
Length = 336
Score = 106 bits (265), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 92/172 (53%), Gaps = 17/172 (9%)
Query: 46 FLFITPIQIDGTIVAPDEPNNW----DPKFPRQWLDFTKLQAVIFQGNGVIDGSGSKWWA 101
LFI IDG ++A +P W + P WL F ++ + G G++DG G WW
Sbjct: 28 LLFI----IDGEMIAQSDPQKWGNGENGVIP--WLIFDQVDGLAIVGRGLLDGQGKSWWD 81
Query: 102 SSCKKNKSNPCRGAPTALTIDSSSSVKVRGLTIQNSQQMNFVISRSASVRVSQVLVSAPE 161
C+ + +T + +V ++ L +NS Q + ++ S +V + + +++PE
Sbjct: 82 IHCRDHPG-------PMMTFSNCGNVTLKSLRFRNSAQTHVLVMGSQNVYIDDIKITSPE 134
Query: 162 DSPNTDGIHITGSTNVVLQDCKIGTGDDCISIVNGSSAIKMKNIYCGPGHGV 213
SPNTDGIHIT ST V + I TGDDC+SI + + + + + CGPGHGV
Sbjct: 135 ASPNTDGIHITSSTAVSINHSDIATGDDCVSIGDQVNNLNVTFMNCGPGHGV 186
>AT5G17200.1 | Symbols: | glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein |
chr5:5653524-5655336 REVERSE
Length = 421
Score = 104 bits (260), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 87/162 (53%), Gaps = 11/162 (6%)
Query: 52 IQIDGTIVAPDEPNNWDPKFPRQWLDFTKLQAVIFQGNGVIDGSGSKWWASSCKKNKSNP 111
+ I G +VAP W W+ F + ++ G G IDG GS WW + +
Sbjct: 100 LSIRGNLVAPGYT--WYAGRYTTWISFDSINGLVVTGGGTIDGRGSLWWGNVNNR----- 152
Query: 112 CRGAPTALTIDSSSSVKVRGLTIQNSQQMNFVISRSASVRVSQVLVSAPEDSPNTDGIHI 171
P A+ ++ + +++ L NS + + +S S ++ V + ++AP DSPNTDGI I
Sbjct: 153 ----PCAMHFNNCNGLRISNLRHLNSPRNHVGLSCSQNIEVRGLRMTAPGDSPNTDGIDI 208
Query: 172 TGSTNVVLQDCKIGTGDDCISIVNGSSAIKMKNIYCGPGHGV 213
+ V + D I TGDDCI+I +GSS I + I+CGPGHG+
Sbjct: 209 SNCIGVHIHDSVIATGDDCIAINSGSSHINITGIFCGPGHGI 250
>AT5G39910.1 | Symbols: | glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein |
chr5:15979412-15981671 REVERSE
Length = 373
Score = 104 bits (259), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 84/164 (51%), Gaps = 20/164 (12%)
Query: 52 IQIDGTIVAPDEPNNW--DPKFPRQWLDFTKLQAVIFQGNGVIDGSGSKWWASSCKKNKS 109
+ I G ++AP+ P W + QW++F + + G+G++
Sbjct: 98 LSISGNLIAPESPYEWKCNKDDCHQWIEFAHINGLYIDGHGLM----------------- 140
Query: 110 NPCRGAPTALTIDSSSSVKVRGLTIQNSQQMNFVISRSASVRVSQVLVSAPEDSPNTDGI 169
C P + I SS+V + + +++S + S V V Q+ ++A DSPNTDGI
Sbjct: 141 -ACLKRPRGVVISHSSNVHISNIMVKDSPNFQMSLEDSKWVIVKQLTITADGDSPNTDGI 199
Query: 170 HITGSTNVVLQDCKIGTGDDCISIVNGSSAIKMKNIYCGPGHGV 213
HI S NV++ D I TGDDCISI +GS I + I CGPGHG+
Sbjct: 200 HIQRSQNVIVYDSNIRTGDDCISIGDGSKYINISRISCGPGHGI 243
>AT4G13760.1 | Symbols: | polygalacturonase | chr4:7988058-7989648
FORWARD
Length = 404
Score = 103 bits (257), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 94/166 (56%), Gaps = 8/166 (4%)
Query: 51 PIQ--IDGTIVAPDEPNNWDPKFPRQWLDFTKLQAVIFQGNGVIDGSGSKWWA-SSCKKN 107
PI+ IDGT++AP PNN W+ F + + G+G +DG G + W + C KN
Sbjct: 88 PIEFLIDGTLLAPANPNNIKQD---TWIKFKYINDLSISGSGTLDGQGKQSWPLNDCHKN 144
Query: 108 KSNPCRGAPTALTIDSSSSVKVRGLTIQNSQQMNFVISRSASVRVSQVLVSAPEDSPNTD 167
+ P ++S++K +T NS+ +F ++ V ++AP +SPNTD
Sbjct: 145 PNCPKLAMTMGFAFVNNSNIK--DITSLNSKMGHFNFFSVHHFNITGVTITAPGNSPNTD 202
Query: 168 GIHITGSTNVVLQDCKIGTGDDCISIVNGSSAIKMKNIYCGPGHGV 213
GI + +N+ + + IGTGDDCI+I++G++ + + N+ CGPGHG+
Sbjct: 203 GIKMGSCSNIHISNTNIGTGDDCIAILSGTTNLDISNVNCGPGHGI 248
>AT2G43890.1 | Symbols: | polygalacturonase, putative / pectinase,
putative | chr2:18176924-18178390 FORWARD
Length = 392
Score = 103 bits (256), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 90/162 (55%), Gaps = 6/162 (3%)
Query: 52 IQIDGTIVAPDEPNNWDPKFPRQWLDFTKLQAVIFQGNGVIDGSGSKWWASSCKKNKSNP 111
QI GTIVAP + W+ F K+ + G G +D G+ +WA C+K+
Sbjct: 88 FQIYGTIVAPSDYRGLGNS--GYWILFVKVNRISIIG-GTLDARGASFWA--CRKS-GKS 141
Query: 112 CRGAPTALTIDSSSSVKVRGLTIQNSQQMNFVISRSASVRVSQVLVSAPEDSPNTDGIHI 171
C ++T + ++ V V GLT NSQ + VI+ +V V +V + AP+ SPNTDG+H+
Sbjct: 142 CPVGARSMTFNWANDVVVSGLTSINSQTTHLVINSCNNVIVRKVKLVAPDQSPNTDGLHV 201
Query: 172 TGSTNVVLQDCKIGTGDDCISIVNGSSAIKMKNIYCGPGHGV 213
GS V + D TGDDCISI G+ + M + CGPGHG+
Sbjct: 202 QGSAGVTVTDGTFHTGDDCISIGPGTRNLYMSKLNCGPGHGI 243
>AT2G33160.1 | Symbols: | glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein |
chr2:14053404-14056246 FORWARD
Length = 664
Score = 102 bits (255), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 92/161 (57%), Gaps = 6/161 (3%)
Query: 54 IDGTIVAPDEPNNWDPKFPRQWLDFTKLQAVIFQGNGVIDGSGSKWW-ASSCKKNKSNPC 112
I GT++AP P + + +W+ F + + G G++DG GS W + C KN + C
Sbjct: 94 IRGTLLAPRNPYAINQE---EWILFKYVDNLTVTGGGLLDGQGSYSWPLNDCNKNTN--C 148
Query: 113 RGAPTALTIDSSSSVKVRGLTIQNSQQMNFVISRSASVRVSQVLVSAPEDSPNTDGIHIT 172
R + S K+ GL NS+ +F + ++ V ++AP DSPNTDGI I
Sbjct: 149 RTLAMNIGFAFVKSSKINGLRSINSKMGHFNLFSVEDFNITGVTITAPGDSPNTDGIKIG 208
Query: 173 GSTNVVLQDCKIGTGDDCISIVNGSSAIKMKNIYCGPGHGV 213
S+++ + + IGTGDDCI+I++G+S + + ++ CGPGHG+
Sbjct: 209 KSSHMQIYNVTIGTGDDCIAILDGTSNLDISDVRCGPGHGI 249
>AT2G26620.1 | Symbols: | glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein |
chr2:11325163-11326835 REVERSE
Length = 402
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 95/166 (57%), Gaps = 8/166 (4%)
Query: 51 PIQ--IDGTIVAPDEPNNWDPKFPRQWLDFTKLQAVIFQGNGVIDGSGSKWWA-SSCKKN 107
PI+ IDGT++AP PN+ W++F + + G+G +DG G + W + C KN
Sbjct: 88 PIEFIIDGTLLAPANPNDIKQD---TWINFRYINNLSISGSGTLDGQGKQSWPLNDCHKN 144
Query: 108 KSNPCRGAPTALTIDSSSSVKVRGLTIQNSQQMNFVISRSASVRVSQVLVSAPEDSPNTD 167
+ P ++S++K +T NS+ +F ++ V ++AP DSPNTD
Sbjct: 145 PNCPKLAISMGFAFVNNSNIK--DITSLNSKMGHFNFFFVHHFNITGVTITAPSDSPNTD 202
Query: 168 GIHITGSTNVVLQDCKIGTGDDCISIVNGSSAIKMKNIYCGPGHGV 213
GI + +N+ + + IGTGDDCI+I++G++ + + NI CGPGHG+
Sbjct: 203 GIKMGSCSNIQISNTNIGTGDDCIAILSGTTKLNISNINCGPGHGI 248
>AT5G44840.1 | Symbols: | glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein |
chr5:18104851-18107127 REVERSE
Length = 381
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 92/175 (52%), Gaps = 16/175 (9%)
Query: 52 IQIDGTIVAPDEPNNWDPKFPRQWLDFTKLQAVIFQGNGVIDGSGSKWWASSCKKNKSNP 111
++ DG IVAP W +W+ F ++ + G+G I G GS +W
Sbjct: 86 VKFDGKIVAPINKAAWSDYKLFRWVSFKEIIGLTVNGSGTIHGRGSSFWKQ--------- 136
Query: 112 CRGAPTALTIDSSSSVKVRGLTIQNSQQMNFVISRSASVRVSQVLVSAPEDSPNTDGIHI 171
L + + + G+T NS + + IS V+++++ + AP DSPNTDGI+I
Sbjct: 137 -------LHFQRCNDLMITGITSFNSPKNHISISECKRVKITKIKLVAPHDSPNTDGINI 189
Query: 172 TGSTNVVLQDCKIGTGDDCISIVNGSSAIKMKNIYCGPGHGVRYTNTICDSLKSI 226
+ S++V + D IGTGDDC++I +GS I + + CGPGHG+ + D +SI
Sbjct: 190 SESSDVDIYDTVIGTGDDCVAINSGSMNINIARMNCGPGHGISVGSVGRDGEESI 244
>AT2G15470.1 | Symbols: | glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein |
chr2:6754330-6756051 FORWARD
Length = 404
Score = 102 bits (253), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 94/166 (56%), Gaps = 8/166 (4%)
Query: 51 PIQ--IDGTIVAPDEPNNWDPKFPRQWLDFTKLQAVIFQGNGVIDGSGSKWW-ASSCKKN 107
PI+ IDGT++AP P++ W++F + + G+G +DG G + W + C N
Sbjct: 88 PIEFIIDGTLLAPANPSDIKQD---TWINFRYINNLSISGSGTLDGQGKQSWPHNDCHTN 144
Query: 108 KSNPCRGAPTALTIDSSSSVKVRGLTIQNSQQMNFVISRSASVRVSQVLVSAPEDSPNTD 167
+ P ++S++K +T NS+ +F ++ V ++AP DSPNTD
Sbjct: 145 PNCPKLAMTMGFAFVNNSNIK--DITSLNSKMGHFNFFSVHHFNITGVTITAPGDSPNTD 202
Query: 168 GIHITGSTNVVLQDCKIGTGDDCISIVNGSSAIKMKNIYCGPGHGV 213
GI + +N+ + D IGTGDDCI+I++G++ + + N+ CGPGHG+
Sbjct: 203 GIKMGSCSNIQISDTNIGTGDDCIAILSGTTNLNISNVNCGPGHGI 248
>AT2G15460.1 | Symbols: | glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein |
chr2:6750934-6752647 FORWARD
Length = 402
Score = 102 bits (253), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 94/166 (56%), Gaps = 8/166 (4%)
Query: 51 PIQ--IDGTIVAPDEPNNWDPKFPRQWLDFTKLQAVIFQGNGVIDGSGSKWW-ASSCKKN 107
PI+ IDGT++AP P++ W++F + + G+G +DG G + W + C N
Sbjct: 88 PIEFIIDGTLLAPANPSDIKQD---TWINFRYINNLSISGSGTLDGQGKQSWPHNDCHTN 144
Query: 108 KSNPCRGAPTALTIDSSSSVKVRGLTIQNSQQMNFVISRSASVRVSQVLVSAPEDSPNTD 167
+ P ++S++K +T NS+ +F ++ V ++AP DSPNTD
Sbjct: 145 PNCPKLAMTMGFAFVNNSNIK--DITSLNSKMGHFNFFSVHHFNITGVTITAPGDSPNTD 202
Query: 168 GIHITGSTNVVLQDCKIGTGDDCISIVNGSSAIKMKNIYCGPGHGV 213
GI + +N+ + D IGTGDDCI+I++G++ + + N+ CGPGHG+
Sbjct: 203 GIKMGSCSNIQISDTNIGTGDDCIAILSGTTNLNISNVNCGPGHGI 248
>AT2G15450.1 | Symbols: | glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein |
chr2:6747536-6749256 FORWARD
Length = 404
Score = 102 bits (253), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 94/166 (56%), Gaps = 8/166 (4%)
Query: 51 PIQ--IDGTIVAPDEPNNWDPKFPRQWLDFTKLQAVIFQGNGVIDGSGSKWW-ASSCKKN 107
PI+ IDGT++AP P++ W++F + + G+G +DG G + W + C N
Sbjct: 88 PIEFIIDGTLLAPANPSDIKQD---TWINFRYINNLSISGSGTLDGQGKQSWPHNDCHTN 144
Query: 108 KSNPCRGAPTALTIDSSSSVKVRGLTIQNSQQMNFVISRSASVRVSQVLVSAPEDSPNTD 167
+ P ++S++K +T NS+ +F ++ V ++AP DSPNTD
Sbjct: 145 PNCPKLAMTMGFAFVNNSNIK--DITSLNSKMGHFNFFSVHHFNITGVTITAPGDSPNTD 202
Query: 168 GIHITGSTNVVLQDCKIGTGDDCISIVNGSSAIKMKNIYCGPGHGV 213
GI + +N+ + D IGTGDDCI+I++G++ + + N+ CGPGHG+
Sbjct: 203 GIKMGSCSNIQISDTNIGTGDDCIAILSGTTNLNISNVNCGPGHGI 248
>AT1G43090.1 | Symbols: | glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein |
chr1:16217197-16219150 REVERSE
Length = 444
Score = 102 bits (253), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 93/166 (56%), Gaps = 8/166 (4%)
Query: 51 PIQ--IDGTIVAPDEPNNWDPKFPRQWLDFTKLQAVIFQGNGVIDGSGS-KWWASSCKKN 107
PI+ IDGT++AP P + W++F + + G+G +DG G W + C KN
Sbjct: 88 PIEFVIDGTLLAPANPRDIKQD---TWINFRYINNLSISGSGTLDGQGKYSWPLNDCHKN 144
Query: 108 KSNPCRGAPTALTIDSSSSVKVRGLTIQNSQQMNFVISRSASVRVSQVLVSAPEDSPNTD 167
+ P ++S +++ +T NS+ +F ++ V ++AP DSPNTD
Sbjct: 145 TNCPKLAMTMGFAFVNNS--RIKDITSLNSKMGHFNFFSVHRFNITGVTITAPGDSPNTD 202
Query: 168 GIHITGSTNVVLQDCKIGTGDDCISIVNGSSAIKMKNIYCGPGHGV 213
GI + +N+ + + IGTGDDCI+I++G++ + + N+ CGPGHG+
Sbjct: 203 GIKMGSCSNIHISNTNIGTGDDCIAILSGTTNLDISNVKCGPGHGI 248
>AT1G43100.1 | Symbols: | glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein |
chr1:16220519-16222473 REVERSE
Length = 444
Score = 102 bits (253), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 94/169 (55%), Gaps = 8/169 (4%)
Query: 48 FITPIQ--IDGTIVAPDEPNNWDPKFPRQWLDFTKLQAVIFQGNGVIDGSGS-KWWASSC 104
+ PI+ IDGT++AP P + W++F + + G+G +DG G W + C
Sbjct: 85 YKNPIEFVIDGTLLAPANPRDIKQD---TWINFRYINNLSISGSGTLDGQGKYSWPLNDC 141
Query: 105 KKNKSNPCRGAPTALTIDSSSSVKVRGLTIQNSQQMNFVISRSASVRVSQVLVSAPEDSP 164
KN + P ++S +++ +T NS+ +F ++ V ++AP DSP
Sbjct: 142 HKNTNCPELAMTMGFAFVNNS--RIKDITSLNSKMGHFNFFSVHRFNITGVTITAPGDSP 199
Query: 165 NTDGIHITGSTNVVLQDCKIGTGDDCISIVNGSSAIKMKNIYCGPGHGV 213
NTDGI + +N+ + + IGTGDDCI+I++G++ + + N+ CGPGHG+
Sbjct: 200 NTDGIKMGSCSNIHISNTNIGTGDDCIAILSGTTNLDISNVKCGPGHGI 248
>AT1G02790.1 | Symbols: PGA4 | PGA4 (POLYGALACTURONASE 4);
polygalacturonase | chr1:610681-612225 REVERSE
Length = 422
Score = 102 bits (253), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 82/141 (58%), Gaps = 3/141 (2%)
Query: 74 QWLDFTKLQAVIFQGNGVIDGSGSKWW-ASSCKKNKSNPCRGAPTALTIDSSSSVKVRGL 132
+W F ++ ++ G G G G W A C K C PT+L + +V++ G+
Sbjct: 128 EWFLFERVDNLVLTGTGTFHGKGEAVWKADGCGKKVQ--CNLPPTSLKFRNMKNVEINGI 185
Query: 133 TIQNSQQMNFVISRSASVRVSQVLVSAPEDSPNTDGIHITGSTNVVLQDCKIGTGDDCIS 192
+ N++ + + ++ +V + + ++AP +SPNTDGIH++ + NV + D I TGDDC+S
Sbjct: 186 SSVNAKAFHMFLVKTENVNIQNIKLTAPAESPNTDGIHLSNADNVSILDSTIATGDDCVS 245
Query: 193 IVNGSSAIKMKNIYCGPGHGV 213
+ GS+ + ++ + CGPGHG+
Sbjct: 246 VGRGSNNVTVERVICGPGHGL 266
>AT1G43080.1 | Symbols: | glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein |
chr1:16213995-16215828 REVERSE
Length = 404
Score = 101 bits (252), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 93/166 (56%), Gaps = 8/166 (4%)
Query: 51 PIQ--IDGTIVAPDEPNNWDPKFPRQWLDFTKLQAVIFQGNGVIDGSGS-KWWASSCKKN 107
PI+ IDGT++AP P + W++F + + G+G +DG G W + C KN
Sbjct: 88 PIEFVIDGTLLAPANPRDIKQD---TWINFRYINNLSISGSGTLDGQGKYSWPLNDCHKN 144
Query: 108 KSNPCRGAPTALTIDSSSSVKVRGLTIQNSQQMNFVISRSASVRVSQVLVSAPEDSPNTD 167
+ P ++S +++ +T NS+ +F ++ V ++AP DSPNTD
Sbjct: 145 TNCPKLAMTMGFAFVNNS--RIKDITSLNSKMGHFNFFSVHRFNITGVTITAPGDSPNTD 202
Query: 168 GIHITGSTNVVLQDCKIGTGDDCISIVNGSSAIKMKNIYCGPGHGV 213
GI + +N+ + + IGTGDDCI+I++G++ + + NI CGPGHG+
Sbjct: 203 GIKMGSCSNIHISNTNIGTGDDCIAILSGTTNLDISNIKCGPGHGI 248
>AT1G17150.1 | Symbols: | glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein |
chr1:5865707-5867495 FORWARD
Length = 402
Score = 101 bits (251), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 93/161 (57%), Gaps = 6/161 (3%)
Query: 54 IDGTIVAPDEPNNWDPKFPRQWLDFTKLQAVIFQGNGVIDGSGSKWWAS-SCKKNKSNPC 112
IDGT++AP PNN D K W++F + + G+G +DG G K W+ C+K+ N C
Sbjct: 94 IDGTLLAP--PNNDDIK-KEIWINFRYINYLTVFGDGTLDGQGKKSWSLIDCQKD--NNC 148
Query: 113 RGAPTALTIDSSSSVKVRGLTIQNSQQMNFVISRSASVRVSQVLVSAPEDSPNTDGIHIT 172
+ D + + G+T NS+ +F +++V + AP +SPNTDGI I
Sbjct: 149 PKLAINMGFDFVKNSSMNGITSLNSKAGHFNFLSVDHFSITRVNIIAPSNSPNTDGIKIA 208
Query: 173 GSTNVVLQDCKIGTGDDCISIVNGSSAIKMKNIYCGPGHGV 213
S+N+ + + I TGDDCI++++G++ + N+ CGPGHG+
Sbjct: 209 LSSNMQISNTHISTGDDCIAMLSGNTNFDIYNVKCGPGHGI 249
>AT2G40310.1 | Symbols: | glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein |
chr2:16834065-16835711 FORWARD
Length = 404
Score = 97.8 bits (242), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 94/166 (56%), Gaps = 8/166 (4%)
Query: 51 PIQ--IDGTIVAPDEPNNWDPKFPRQWLDFTKLQAVIFQGNGVIDGSGSKWWA-SSCKKN 107
PI+ IDGT++AP P++ W++F + + G+G +DG G + W + C KN
Sbjct: 88 PIEFVIDGTLLAPANPSDIKQD---TWINFRYINNLSISGSGTLDGQGKQSWPLNDCHKN 144
Query: 108 KSNPCRGAPTALTIDSSSSVKVRGLTIQNSQQMNFVISRSASVRVSQVLVSAPEDSPNTD 167
+ P ++S++K +T NS+ +F ++ V ++A DSPNTD
Sbjct: 145 LNCPKLAMTMGFAFVNNSNIK--DITSLNSKMGHFNFFSVHHFNITGVTITASGDSPNTD 202
Query: 168 GIHITGSTNVVLQDCKIGTGDDCISIVNGSSAIKMKNIYCGPGHGV 213
GI + +N+ + + IGTGDDCI+I++G++ + + N+ CGPGHG+
Sbjct: 203 GIKMGSCSNMHISNTNIGTGDDCIAILSGTTNLDISNVKCGPGHGI 248
>AT4G18180.1 | Symbols: | glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein |
chr4:10065626-10067317 FORWARD
Length = 414
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 80/149 (53%), Gaps = 7/149 (4%)
Query: 75 WLDFTKLQAVIFQGNGVIDGSGSKWWASSCKKNKSNPCRGAPTALTIDSSSSVKVRGLTI 134
W+ F + + G G DG G+ W + + SN C+ PT+L + VR ++
Sbjct: 114 WIQFGWINGLTLTGGGTFDGQGALAWPFNNCTSDSN-CKLLPTSLKFVGMNRTVVRRISS 172
Query: 135 QNSQQMNFVISRSASVRVSQVLVSAPEDSPNTDGIHITGSTNVVLQDCKIGTGDDCISIV 194
NS+ + + + +++ ++AP DSPNTDGIHI S+NV I TGDDC+SI
Sbjct: 173 VNSKFFHIALVECRDFKGTRLNITAPSDSPNTDGIHIERSSNVYFSRSHIATGDDCVSIG 232
Query: 195 NGSSAIKMKNIYCGPGHGV------RYTN 217
G+S I + +I CGPGHG+ RY N
Sbjct: 233 QGNSQITITSIKCGPGHGISVGSLGRYPN 261
>AT3G07840.1 | Symbols: | polygalacturonase, putative / pectinase,
putative | chr3:2501893-2503475 REVERSE
Length = 401
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 82/142 (57%), Gaps = 3/142 (2%)
Query: 73 RQWLDFTKLQAVIFQGNGVIDGSG-SKWWASSCKKNKSNPCRGAPTALTIDSSSSVKVRG 131
+W+ F ++ G G+ DG G + W ++C +K+ C+ P ++ D + ++R
Sbjct: 97 ERWVVFLRINGFKLNGGGIFDGEGNAAWRVNNC--HKTFECKKLPISIRFDFVENAEIRD 154
Query: 132 LTIQNSQQMNFVISRSASVRVSQVLVSAPEDSPNTDGIHITGSTNVVLQDCKIGTGDDCI 191
++ +++ + + + ++ V V AP +SPNTDGIH+ S V + + KI TGDDCI
Sbjct: 155 ISSIDAKNFHINVLGAKNMTFDNVKVIAPAESPNTDGIHLGRSEGVKILNSKIATGDDCI 214
Query: 192 SIVNGSSAIKMKNIYCGPGHGV 213
S+ +G + ++N+ CGPGHG+
Sbjct: 215 SVGDGMKNLHVENVMCGPGHGI 236
>AT5G48140.1 | Symbols: | polygalacturonase, putative / pectinase,
putative | chr5:19518907-19520412 REVERSE
Length = 395
Score = 94.7 bits (234), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 89/167 (53%), Gaps = 10/167 (5%)
Query: 50 TPIQID--GTIVAPDEPNNWDPKFPRQWLDFTKLQAVIFQGNGVIDGSG-SKWWASSCKK 106
PI+I GT+ A N + +W+ F + G GV DG G + W ++C K
Sbjct: 76 APIRIALLGTVKADGNANGKE-----KWVAFRNINGFKLNGGGVFDGEGNAAWRVNNCHK 130
Query: 107 NKSNPCRGAPTALTIDSSSSVKVRGLTIQNSQQMNFVISRSASVRVSQVLVSAPEDSPNT 166
+ C+ P ++ D + K+RG+T +++ + + + +V V + AP +SPNT
Sbjct: 131 TFN--CKKLPISIRFDFVTDAKIRGITSLDAKHFHINVIGAKNVTFEDVKIIAPAESPNT 188
Query: 167 DGIHITGSTNVVLQDCKIGTGDDCISIVNGSSAIKMKNIYCGPGHGV 213
DGIH+ S + + + I TGDDC+S+ +G + ++ + CGPGHG+
Sbjct: 189 DGIHVGRSDGIKIINSFISTGDDCVSVGDGMKNLLVERVTCGPGHGI 235
>AT3G14040.1 | Symbols: | exopolygalacturonase / galacturan
1,4-alpha-galacturonidase / pectinase |
chr3:4648607-4650226 REVERSE
Length = 445
Score = 93.6 bits (231), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 88/174 (50%), Gaps = 12/174 (6%)
Query: 52 IQIDGTIVAPDEPNNWDPKFPRQWLDFTKLQAVIFQGNGVI-DGSGS-KWWASSCKKNKS 109
++++G AP P W+DF L GN I DG GS W A+ C K +
Sbjct: 128 LELNGNFKAPATVKTTKPH--AGWIDFENLADFTLNGNKAIFDGQGSLAWKANDCAK--T 183
Query: 110 NPCRGAPTALTIDSSSSVKVRGLTIQNSQQMNFVISRSASVRVSQVLVSAPEDSPNTDGI 169
C P + ++ K+ +T NS+ + I ++ ++ + + AP +S NTDGI
Sbjct: 184 GKCNSLPINIRFTGLTNSKINSITSTNSKLFHMNILNCKNITLTDIGIDAPPESLNTDGI 243
Query: 170 HITGSTNVVLQDCKIGTGDDCISIVNGSSAIKMKNIYCGPGHGV------RYTN 217
HI S V L KI TGDDC+SI +G+ + ++N+ CGPGHG+ RY N
Sbjct: 244 HIGRSNGVNLIGAKIKTGDDCVSIGDGTENLIVENVECGPGHGISIGSLGRYPN 297
>AT3G07850.1 | Symbols: | exopolygalacturonase / galacturan
1,4-alpha-galacturonidase / pectinase |
chr3:2505813-2507438 REVERSE
Length = 444
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 88/174 (50%), Gaps = 12/174 (6%)
Query: 52 IQIDGTIVAPDEPNNWDPKFPRQWLDFTKLQAVIFQGNGVI-DGSGS-KWWASSCKKNKS 109
++++G AP P W+DF + GN I DG GS W A+ C K +
Sbjct: 127 LELNGNFKAPATVKTTKPH--AGWIDFENIADFTLNGNKAIFDGQGSLAWKANDCAK--T 182
Query: 110 NPCRGAPTALTIDSSSSVKVRGLTIQNSQQMNFVISRSASVRVSQVLVSAPEDSPNTDGI 169
C P + ++ K+ +T NS+ + I ++ +S + + AP +S NTDGI
Sbjct: 183 GKCNSLPINIRFTGLTNSKINSITSTNSKLFHMNILNCKNITLSDIGIDAPPESLNTDGI 242
Query: 170 HITGSTNVVLQDCKIGTGDDCISIVNGSSAIKMKNIYCGPGHGV------RYTN 217
HI S V L KI TGDDC+SI +G+ + ++N+ CGPGHG+ RY N
Sbjct: 243 HIGRSNGVNLIGAKIKTGDDCVSIGDGTENLIVENVECGPGHGISIGSLGRYPN 296
>AT3G07830.1 | Symbols: | polygalacturonase, putative / pectinase,
putative | chr3:2499454-2500966 REVERSE
Length = 397
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 96/167 (57%), Gaps = 9/167 (5%)
Query: 50 TPIQID--GTIVAPDEPNNWDPKFPRQWLDFTKLQAVIFQGNGVIDGSG-SKWWASSCKK 106
+P++I GT++A + N+ K +W+ F ++ G G DG G + W ++C
Sbjct: 76 SPVEITLLGTVLA--DGNSIHGK--EKWVVFQRMDGFRLNGGGTFDGEGNAAWRVNNC-- 129
Query: 107 NKSNPCRGAPTALTIDSSSSVKVRGLTIQNSQQMNFVISRSASVRVSQVLVSAPEDSPNT 166
+K+ C+ P ++ D ++ ++R ++ +++ + + + ++ V + AP +SPNT
Sbjct: 130 HKTFECKKLPISIRFDFVTNAEIRDISSIDAKNFHINVIGAKNMTFDNVKIMAPAESPNT 189
Query: 167 DGIHITGSTNVVLQDCKIGTGDDCISIVNGSSAIKMKNIYCGPGHGV 213
DGIH+ S V + + +I TGDDC+S+ +G + +KN+ CGPGHG+
Sbjct: 190 DGIHLGRSVGVSIINSRISTGDDCVSVGDGMVNLLVKNVVCGPGHGI 236
>AT1G05650.1 | Symbols: | polygalacturonase, putative / pectinase,
putative | chr1:1690264-1692126 REVERSE
Length = 394
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 85/162 (52%), Gaps = 6/162 (3%)
Query: 52 IQIDGTIVAPDEPNNWDPKFPRQWLDFTKLQAVIFQGNGVIDGSGSKWWASSCKKNKSNP 111
Q+ GT+VAP++ + W+ F K+ G G D GS +W SC+K+ N
Sbjct: 87 FQVTGTVVAPEDYRTFGNS--GSWILFNKVNRFSLVG-GTFDARGSGFW--SCRKSGQN- 140
Query: 112 CRGAPTALTIDSSSSVKVRGLTIQNSQQMNFVISRSASVRVSQVLVSAPEDSPNTDGIHI 171
C +++ +S+ V + G+ NSQ + ++ +V V + + AP DSPNTDG +
Sbjct: 141 CPPGVRSISFNSAKDVIISGVKSMNSQVSHMTLNGCTNVAVRNIRLVAPGDSPNTDGFTV 200
Query: 172 TGSTNVVLQDCKIGTGDDCISIVNGSSAIKMKNIYCGPGHGV 213
ST V L + TGDDC++I G+ + + CGPGHGV
Sbjct: 201 QFSTGVTLTGSTVQTGDDCVAIGQGTRNFLISKLACGPGHGV 242
>AT1G78400.1 | Symbols: | glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein |
chr1:29498281-29499682 REVERSE
Length = 404
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 85/161 (52%), Gaps = 6/161 (3%)
Query: 54 IDGTIVAPDEPNNWDPKFPRQWLDFTKLQAVIFQGNGVIDGSGS-KWWASSCKKNKSNPC 112
I GT++AP +PN W+ F + + G G++DG GS W ++C++ ++ C
Sbjct: 96 IKGTLLAPKDPNAIKQD---SWIIFRYVDYLTVSGGGILDGQGSYSWPLNNCRQ--THNC 150
Query: 113 RGAPTALTIDSSSSVKVRGLTIQNSQQMNFVISRSASVRVSQVLVSAPEDSPNTDGIHIT 172
R P + ++ + NS+ + +++V + AP DSPNTDGI I
Sbjct: 151 RALPMNMGFQFVRFSRLTRIKSINSKMGHLNFFSVQHFDITRVNIKAPGDSPNTDGIKIG 210
Query: 173 GSTNVVLQDCKIGTGDDCISIVNGSSAIKMKNIYCGPGHGV 213
S ++ + I TGDDCI+I++G+ + + + CGPGHG+
Sbjct: 211 SSNHMKIHHVDIATGDDCIAILSGTFNLDINKVNCGPGHGI 251
>AT4G32380.1 | Symbols: | glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein |
chr4:15633641-15635420 FORWARD
Length = 354
Score = 90.5 bits (223), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 78/149 (52%), Gaps = 7/149 (4%)
Query: 65 NNWDPKFPRQWLDFTKLQAVIFQGNGVIDGSGSKWWASSCKKNKSNPCRGAPTALTIDSS 124
N+W WL F K+ ++ G+GV++ G WW+S +++ P A+
Sbjct: 3 NDWGRNKLDCWLCFEKVTGLVLTGSGVLNTHGESWWSSVALQSR-------PVAVRFFGC 55
Query: 125 SSVKVRGLTIQNSQQMNFVISRSASVRVSQVLVSAPEDSPNTDGIHITGSTNVVLQDCKI 184
++ GLT NS + + I S + +S + + AP SPNTDGI I+ S N+ + I
Sbjct: 56 QNILYNGLTQINSPRNHITILDSNNATLSNLHLIAPASSPNTDGIDISHSQNINIMSSTI 115
Query: 185 GTGDDCISIVNGSSAIKMKNIYCGPGHGV 213
TGDDC++I S I + + CGPGHG+
Sbjct: 116 KTGDDCVAIKRNSYNINVTYVTCGPGHGI 144
>AT1G05660.1 | Symbols: | polygalacturonase, putative / pectinase,
putative | chr1:1694286-1696058 REVERSE
Length = 394
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 87/163 (53%), Gaps = 8/163 (4%)
Query: 52 IQIDGTIVAPDEPNNW-DPKFPRQWLDFTKLQAVIFQGNGVIDGSGSKWWASSCKKNKSN 110
Q+ GT++AP++ + + F W+ F K+ G G D + +W SC+K+ N
Sbjct: 87 FQVAGTVIAPEDYRTFGNSGF---WILFNKVNRFSLVG-GTFDARANGFW--SCRKSGQN 140
Query: 111 PCRGAPTALTIDSSSSVKVRGLTIQNSQQMNFVISRSASVRVSQVLVSAPEDSPNTDGIH 170
C +++ +S+ V + G+ NSQ + ++ +V V V + AP +SPNTDG H
Sbjct: 141 -CPPGVRSISFNSAKDVIISGVKSMNSQVTHMTLNGCTNVVVRNVKLVAPGNSPNTDGFH 199
Query: 171 ITGSTNVVLQDCKIGTGDDCISIVNGSSAIKMKNIYCGPGHGV 213
+ ST V + TGDDC++I G+ + + + CGPGHGV
Sbjct: 200 VQHSTGVTFTGSTVQTGDDCVAIGPGTRNLLITKLACGPGHGV 242
>AT3G07820.1 | Symbols: | polygalacturonase 3 (PGA3) / pectinase |
chr3:2496597-2498028 REVERSE
Length = 391
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 81/142 (57%), Gaps = 3/142 (2%)
Query: 73 RQWLDFTKLQAVIFQGNGVIDGSG-SKWWASSCKKNKSNPCRGAPTALTIDSSSSVKVRG 131
+W+ F + G G DG G + W ++C +K+ C+ P ++ D + ++R
Sbjct: 96 EKWVVFGNIDGFKLNGGGAFDGEGNAAWRVNNC--HKTFECKKLPISIRFDFILNSEIRD 153
Query: 132 LTIQNSQQMNFVISRSASVRVSQVLVSAPEDSPNTDGIHITGSTNVVLQDCKIGTGDDCI 191
++ +++ + + + ++ ++ + + APEDSPNTDGIH+ S V + + I TGDDCI
Sbjct: 154 ISSIDAKNFHINVLGAKNMTMNNIKIVAPEDSPNTDGIHLGRSDGVKILNSFISTGDDCI 213
Query: 192 SIVNGSSAIKMKNIYCGPGHGV 213
S+ +G + ++ + CGPGHG+
Sbjct: 214 SVGDGMKNLHVEKVTCGPGHGI 235
>AT2G23900.1 | Symbols: | glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein |
chr2:10174556-10176489 FORWARD
Length = 477
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 66/121 (54%), Gaps = 7/121 (5%)
Query: 79 TKLQAVIFQGN-GVIDGSGSKWWASSCKKNKSNPCRG--APTALTIDSSSSVKVRGLTIQ 135
T L V+ GN G I+G G WW K +S +G P + I S +V++ +TI
Sbjct: 157 TNLTDVVITGNNGTINGQGKYWWV----KYRSGGFKGITRPYTIEIIFSQNVQISNITII 212
Query: 136 NSQQMNFVISRSASVRVSQVLVSAPEDSPNTDGIHITGSTNVVLQDCKIGTGDDCISIVN 195
+S N +V V V + AP DSPNTDGI+ TN +++DC + +GDDCI++ +
Sbjct: 213 DSPAWNIHPVYCNNVIVKGVTILAPIDSPNTDGINPDSCTNTLIEDCYVVSGDDCIAVKS 272
Query: 196 G 196
G
Sbjct: 273 G 273
>AT3G61490.2 | Symbols: | glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein |
chr3:22758439-22760137 FORWARD
Length = 476
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 63/119 (52%), Gaps = 4/119 (3%)
Query: 79 TKLQAVIFQGN-GVIDGSGSKWWASSCKKNKSNPCRGAPTALTIDSSSSVKVRGLTIQNS 137
T L VI GN G IDG GS WW K + P + + S ++++ LT +S
Sbjct: 146 TNLSDVIITGNNGTIDGQGSFWWQ---KFHGGKLKYTRPYLIELMFSDTIQISNLTFLDS 202
Query: 138 QQMNFVISRSASVRVSQVLVSAPEDSPNTDGIHITGSTNVVLQDCKIGTGDDCISIVNG 196
N S+++ V V + AP SPNTDGI+ TN ++DC I +GDDCI++ +G
Sbjct: 203 PSWNIHPVYSSNIIVKGVTIIAPVKSPNTDGINPDSCTNTRIEDCYIISGDDCIAVKSG 261
>AT3G61490.1 | Symbols: | glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein |
chr3:22758439-22760137 FORWARD
Length = 476
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 63/119 (52%), Gaps = 4/119 (3%)
Query: 79 TKLQAVIFQGN-GVIDGSGSKWWASSCKKNKSNPCRGAPTALTIDSSSSVKVRGLTIQNS 137
T L VI GN G IDG GS WW K + P + + S ++++ LT +S
Sbjct: 146 TNLSDVIITGNNGTIDGQGSFWWQ---KFHGGKLKYTRPYLIELMFSDTIQISNLTFLDS 202
Query: 138 QQMNFVISRSASVRVSQVLVSAPEDSPNTDGIHITGSTNVVLQDCKIGTGDDCISIVNG 196
N S+++ V V + AP SPNTDGI+ TN ++DC I +GDDCI++ +G
Sbjct: 203 PSWNIHPVYSSNIIVKGVTIIAPVKSPNTDGINPDSCTNTRIEDCYIISGDDCIAVKSG 261
>AT3G62110.1 | Symbols: | glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein |
chr3:22997313-22999503 REVERSE
Length = 471
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 60/115 (52%), Gaps = 3/115 (2%)
Query: 82 QAVIFQGNGVIDGSGSKWWASSCKKNKSNPCRGAPTALTIDSSSSVKVRGLTIQNSQQMN 141
VI NG IDG G+ WW + + N R P + + +S+ + + LT NS N
Sbjct: 148 DVVITGENGTIDGQGTVWW-DWFRNGELNYTR--PHLVELMNSTGLIISNLTFLNSPFWN 204
Query: 142 FVISRSASVRVSQVLVSAPEDSPNTDGIHITGSTNVVLQDCKIGTGDDCISIVNG 196
V V + + AP +SPNTDG+ STNV ++DC I TGDD +SI +G
Sbjct: 205 IHPVYCRDVVVKNLTILAPLESPNTDGVDPDSSTNVCIEDCYIVTGDDLVSIKSG 259
>AT4G23500.1 | Symbols: | glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein |
chr4:12264640-12267074 FORWARD
Length = 495
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 59/113 (52%), Gaps = 3/113 (2%)
Query: 84 VIFQGNGVIDGSGSKWWASSCKKNKSNPCRGAPTALTIDSSSSVKVRGLTIQNSQQMNFV 143
VI NG IDG G WW K+ + R P + I S +++ LT NS +
Sbjct: 175 VITGENGTIDGQGEPWWGK-FKRGELKYTR--PYLIEIMHSDGIQISNLTFLNSPSWHIH 231
Query: 144 ISRSASVRVSQVLVSAPEDSPNTDGIHITGSTNVVLQDCKIGTGDDCISIVNG 196
S+++ + + + AP PNTDGI+ TN ++DC I +GDDCI++ +G
Sbjct: 232 PVYSSNIYIQGLTILAPVTVPNTDGINPDSCTNTRIEDCYIVSGDDCIAVKSG 284
>AT3G48950.1 | Symbols: | glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein |
chr3:18148017-18149987 FORWARD
Length = 469
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 63/119 (52%), Gaps = 4/119 (3%)
Query: 79 TKLQAVIFQGN-GVIDGSGSKWWASSCKKNKSNPCRGAPTALTIDSSSSVKVRGLTIQNS 137
T L V+ GN G I+G G WW KK + R P + I S ++++ +T+ +S
Sbjct: 147 TNLTDVVITGNNGTINGQGQYWW-DKFKKKQFKITR--PYLIEILFSKNIQISNITLIDS 203
Query: 138 QQMNFVISRSASVRVSQVLVSAPEDSPNTDGIHITGSTNVVLQDCKIGTGDDCISIVNG 196
N SV V V V AP PNTDGI+ TN +++DC I +GDDCI++ +G
Sbjct: 204 PSWNIHPVYCNSVIVKSVTVLAPVTVPNTDGINPDSCTNTLIEDCYIVSGDDCIAVKSG 262
>AT4G23820.1 | Symbols: | glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein |
chr4:12397217-12400050 REVERSE
Length = 444
Score = 63.9 bits (154), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 60/121 (49%), Gaps = 12/121 (9%)
Query: 81 LQAVIFQG-NGVIDGSGSKWW----ASSCKKNKSNPCRGAPTALTIDSSSSVKVRGLTIQ 135
L+ V+ G NG IDG G WW + + K + P + S + + + Q
Sbjct: 144 LRDVVITGQNGTIDGQGEVWWNMWRSRTLKYTR-------PNLIEFKDSKEIIISNVIFQ 196
Query: 136 NSQQMNFVISRSASVRVSQVLVSAPEDSPNTDGIHITGSTNVVLQDCKIGTGDDCISIVN 195
NS N ++V + V + AP+DSPNTDGI S NV ++D I TGDD ++I +
Sbjct: 197 NSPFWNIHPVYCSNVVIHHVTILAPQDSPNTDGIDPDSSYNVCIEDSYISTGDDLVAIKS 256
Query: 196 G 196
G
Sbjct: 257 G 257
>AT4G33440.1 | Symbols: | glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein |
chr4:16092020-16094732 FORWARD
Length = 475
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 60/115 (52%), Gaps = 3/115 (2%)
Query: 82 QAVIFQGNGVIDGSGSKWWASSCKKNKSNPCRGAPTALTIDSSSSVKVRGLTIQNSQQMN 141
VI NG IDG G WW + + RG + + +S ++ + LT+ NS
Sbjct: 177 NVVITGENGTIDGQGKMWWELWWNRTLVH-TRGH--LIELKNSHNILISNLTLLNSPFWT 233
Query: 142 FVISRSASVRVSQVLVSAPEDSPNTDGIHITGSTNVVLQDCKIGTGDDCISIVNG 196
++V + + + AP ++PNTDGI STNV ++DC I +GDD +++ +G
Sbjct: 234 IHPVYCSNVVIRNMTILAPMNAPNTDGIDPDSSTNVCIEDCYIESGDDLVAVKSG 288
>AT5G41870.1 | Symbols: | glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein |
chr5:16758817-16760490 REVERSE
Length = 449
Score = 60.5 bits (145), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 66/128 (51%), Gaps = 7/128 (5%)
Query: 73 RQWLDFTK---LQAVIFQG-NGVIDGSGSKWWASSCKKNKSNPCRGAPTALTIDSSSSVK 128
R+++ F L V+ G NG IDG G WW + + R P + ++S+++
Sbjct: 138 RRYISFIHGDGLNDVVITGRNGTIDGQGEPWW-NMWRHGTLKFTR--PGLIEFNNSTNIL 194
Query: 129 VRGLTIQNSQQMNFVISRSASVRVSQVLVSAPEDSPNTDGIHITGSTNVVLQDCKIGTGD 188
V + +QNS ++V V V + AP DS NTDGI S+NV ++D I TGD
Sbjct: 195 VSHVVLQNSPFWTLHPVYCSNVVVHHVTILAPTDSYNTDGIDPDSSSNVCIEDSYISTGD 254
Query: 189 DCISIVNG 196
D +++ +G
Sbjct: 255 DLVAVKSG 262
>AT3G16850.1 | Symbols: | glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein |
chr3:5748692-5750981 FORWARD
Length = 455
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 19/161 (11%)
Query: 52 IQIDGTIVAPDEPNNWDPKFP---------------RQWLDFTKLQAVIFQG-NGVIDGS 95
++ TI+A +P++WD P R ++ L V+ G NG DG
Sbjct: 99 LEKGATILASPDPSHWDVVSPLPSYGRGIELPGKRYRSLINGDNLIDVVITGENGTFDGQ 158
Query: 96 GSKWWASSCKKNKSNPCRGAPTALTIDSSSSVKVRGLTIQNSQQMNFVISRSASVRVSQV 155
G+ WW + N R P + SS + + LT N+ +N + + + +V
Sbjct: 159 GAAWW-EWLESGSLNYSR--PHIIEFVSSKHILISNLTFLNAPAINIHPVYCSQIHIRKV 215
Query: 156 LVSAPEDSPNTDGIHITGSTNVVLQDCKIGTGDDCISIVNG 196
L+ DSP+ G+ S NV ++D I G D +S+ +G
Sbjct: 216 LIETSVDSPHVLGVAPDSSDNVCIEDSTINVGHDAVSLKSG 256
>AT1G19170.1 | Symbols: | glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein |
chr1:6616777-6618875 FORWARD
Length = 506
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 5/118 (4%)
Query: 81 LQAVIFQG-NGVIDGSGSKWWASSCKKNKSNPCRGAPTALTIDSSSSVKVRGLTIQNSQQ 139
L+ ++ G NG I+G G WW ++ N RG + I SS + + +T+++S
Sbjct: 191 LKDIVITGHNGTINGQGQSWWKKH-QRRLLNYTRGP--LVQIMWSSDIVIANITMRDSPF 247
Query: 140 MNFVISRSASVRVSQVLVSAP-EDSPNTDGIHITGSTNVVLQDCKIGTGDDCISIVNG 196
+V + V + AP +PNTDGI ++V++DC I TGDD I+I +G
Sbjct: 248 WTLHPYDCKNVTIRNVTILAPVTGAPNTDGIDPDSCEDMVIEDCYISTGDDAIAIKSG 305
>AT3G06770.2 | Symbols: | glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein |
chr3:2135119-2137033 REVERSE
Length = 446
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 70/159 (44%), Gaps = 27/159 (16%)
Query: 58 IVAPDEPNNWD-----PKFPR----------QWLDFTKLQAVIFQG-NGVIDGSGSKWW- 100
IVA +P++W+ P + R ++ KL V+ G NG IDG G WW
Sbjct: 108 IVASQDPSHWEVVDPLPSYGRGIDLPGKRYKSLINGNKLHDVVVTGDNGTIDGQGLVWWD 167
Query: 101 ---ASSCKKNKSNPCRGAPTALTIDSSSSVKVRGLTIQNSQQMNFVISRSASVRVSQVLV 157
+ S K N+ P + SS +V V LT N+ + S+ V + ++L
Sbjct: 168 RFTSHSLKYNR-------PHLIEFLSSENVIVSNLTFLNAPAYSIYSIYSSHVYIHKILA 220
Query: 158 SAPEDSPNTDGIHITGSTNVVLQDCKIGTGDDCISIVNG 196
+ SP T GI S V +Q+ I G D IS+ +G
Sbjct: 221 HSSPKSPYTIGIVPDSSDYVCIQNSTINVGYDAISLKSG 259
>AT3G06770.1 | Symbols: | glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein |
chr3:2135119-2136616 REVERSE
Length = 377
Score = 53.9 bits (128), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 70/159 (44%), Gaps = 27/159 (16%)
Query: 58 IVAPDEPNNWD-----PKFPR----------QWLDFTKLQAVIFQG-NGVIDGSGSKWW- 100
IVA +P++W+ P + R ++ KL V+ G NG IDG G WW
Sbjct: 39 IVASQDPSHWEVVDPLPSYGRGIDLPGKRYKSLINGNKLHDVVVTGDNGTIDGQGLVWWD 98
Query: 101 ---ASSCKKNKSNPCRGAPTALTIDSSSSVKVRGLTIQNSQQMNFVISRSASVRVSQVLV 157
+ S K N+ P + SS +V V LT N+ + S+ V + ++L
Sbjct: 99 RFTSHSLKYNR-------PHLIEFLSSENVIVSNLTFLNAPAYSIYSIYSSHVYIHKILA 151
Query: 158 SAPEDSPNTDGIHITGSTNVVLQDCKIGTGDDCISIVNG 196
+ SP T GI S V +Q+ I G D IS+ +G
Sbjct: 152 HSSPKSPYTIGIVPDSSDYVCIQNSTINVGYDAISLKSG 190
>AT3G06770.3 | Symbols: | glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein |
chr3:2135119-2136616 REVERSE
Length = 377
Score = 53.9 bits (128), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 70/159 (44%), Gaps = 27/159 (16%)
Query: 58 IVAPDEPNNWD-----PKFPR----------QWLDFTKLQAVIFQG-NGVIDGSGSKWW- 100
IVA +P++W+ P + R ++ KL V+ G NG IDG G WW
Sbjct: 39 IVASQDPSHWEVVDPLPSYGRGIDLPGKRYKSLINGNKLHDVVVTGDNGTIDGQGLVWWD 98
Query: 101 ---ASSCKKNKSNPCRGAPTALTIDSSSSVKVRGLTIQNSQQMNFVISRSASVRVSQVLV 157
+ S K N+ P + SS +V V LT N+ + S+ V + ++L
Sbjct: 99 RFTSHSLKYNR-------PHLIEFLSSENVIVSNLTFLNAPAYSIYSIYSSHVYIHKILA 151
Query: 158 SAPEDSPNTDGIHITGSTNVVLQDCKIGTGDDCISIVNG 196
+ SP T GI S V +Q+ I G D IS+ +G
Sbjct: 152 HSSPKSPYTIGIVPDSSDYVCIQNSTINVGYDAISLKSG 190
>AT3G57790.1 | Symbols: | glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein |
chr3:21405387-21407088 REVERSE
Length = 490
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 52/114 (45%), Gaps = 10/114 (8%)
Query: 88 GNGVIDGSGSKWWASSCKK-------NKSNPCRG---APTALTIDSSSSVKVRGLTIQNS 137
G G IDG GSK+ +K N++ C G P + S +V++ +T++
Sbjct: 135 GGGAIDGQGSKFVVRFDEKKNVMVSWNQTGACLGDECRPRLVGFVDSINVEIWNITLREP 194
Query: 138 QQMNFVISRSASVRVSQVLVSAPEDSPNTDGIHITGSTNVVLQDCKIGTGDDCI 191
I R + V V + ++PN DGI I S N V+ C I TGDD I
Sbjct: 195 AYWCLHIVRCENTSVHDVSILGDFNTPNNDGIDIEDSNNTVITRCHIDTGDDAI 248
>AT5G49215.1 | Symbols: | glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein |
chr5:19953670-19955874 FORWARD
Length = 449
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 78/188 (41%), Gaps = 30/188 (15%)
Query: 52 IQIDGTIVAPDEPNNWD-----PKFPR----------QWLDFTKLQAVIFQG-NGVIDGS 95
++ D I+A +P++W P + R ++ L V+ G NG IDG
Sbjct: 102 LEKDAVILASQDPSHWQVTDALPSYGRGIDLPGKRYMSLINGDMLHDVVVTGDNGTIDGQ 161
Query: 96 GSKWWASSCKKNKSNPCRGAPTALTIDSSSSVKVRGLTIQNSQQMNFVISRSASVRVSQV 155
G WW + N + P + S+ +V V LT N+ ++ + +V
Sbjct: 162 GLVWWD---RFNSHSLEYSRPHLVEFVSAENVIVSNLTFLNAPAYTIHSVYCRNLYIHRV 218
Query: 156 LVSAPEDSPNTDGIHITGSTNVVLQDCKIGTGDDCISIVNG-----------SSAIKMKN 204
+ +SP T GI S NV +Q+ I G D IS+ +G ++ ++++N
Sbjct: 219 TANTCPESPYTIGIVPDSSENVCIQESSINMGYDAISLKSGCDEYGLSYARPTANVQIRN 278
Query: 205 IYCGPGHG 212
+Y G
Sbjct: 279 VYLRAASG 286
>AT5G49215.2 | Symbols: | glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein |
chr5:19953670-19955874 FORWARD
Length = 447
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 78/188 (41%), Gaps = 30/188 (15%)
Query: 52 IQIDGTIVAPDEPNNWD-----PKFPR----------QWLDFTKLQAVIFQG-NGVIDGS 95
++ D I+A +P++W P + R ++ L V+ G NG IDG
Sbjct: 100 LEKDAVILASQDPSHWQVTDALPSYGRGIDLPGKRYMSLINGDMLHDVVVTGDNGTIDGQ 159
Query: 96 GSKWWASSCKKNKSNPCRGAPTALTIDSSSSVKVRGLTIQNSQQMNFVISRSASVRVSQV 155
G WW + N + P + S+ +V V LT N+ ++ + +V
Sbjct: 160 GLVWWD---RFNSHSLEYSRPHLVEFVSAENVIVSNLTFLNAPAYTIHSVYCRNLYIHRV 216
Query: 156 LVSAPEDSPNTDGIHITGSTNVVLQDCKIGTGDDCISIVNG-----------SSAIKMKN 204
+ +SP T GI S NV +Q+ I G D IS+ +G ++ ++++N
Sbjct: 217 TANTCPESPYTIGIVPDSSENVCIQESSINMGYDAISLKSGCDEYGLSYARPTANVQIRN 276
Query: 205 IYCGPGHG 212
+Y G
Sbjct: 277 VYLRAASG 284