Jatropha Genome Database
- JcCB0796091.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0796091.10 + phase: 2 /partial
(96 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G37740.1 | Symbols: AtGRF2 | AtGRF2 (GROWTHREGULATING FACTOR ... 117 1e-27
AT2G22840.1 | Symbols: AtGRF1 | AtGRF1 (GROWTH-REGULATING FACTOR... 104 9e-24
AT3G13960.1 | Symbols: AtGRF5 | AtGRF5 (GROWTH-REGULATING FACTOR... 104 1e-23
AT2G06200.1 | Symbols: AtGRF6 | AtGRF6 (GROWTH-REGULATING FACTOR... 81 1e-16
AT2G36400.1 | Symbols: AtGRF3 | AtGRF3 (GROWTH-REGULATING FACTOR... 72 9e-14
AT3G52910.1 | Symbols: AtGRF4 | AtGRF4 (GROWTH-REGULATING FACTOR... 69 5e-13
AT2G45480.1 | Symbols: AtGRF9 | AtGRF9 (GROWTH-REGULATING FACTOR... 51 2e-07
>AT4G37740.1 | Symbols: AtGRF2 | AtGRF2 (GROWTHREGULATING FACTOR 2);
transcription activator | chr4:17725533-17727609 REVERSE
Length = 535
Score = 117 bits (294), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 58/95 (61%), Positives = 67/95 (70%), Gaps = 8/95 (8%)
Query: 3 HGVFTEARGPFTPSQWMELEHQALIYKYITANVPIPSNLLIPIRKALDSAXXXXXXXXXX 62
G FT +GPFT +QW ELE QALIYKYITANVP+PS+LLI I+K+
Sbjct: 155 QGNFTGVKGPFTLTQWAELEQQALIYKYITANVPVPSSLLISIKKSF-------YPYGSL 207
Query: 63 RPNTLPWGTFHLGFS-NNTDPEPGRCRRTDGKKWR 96
P++ WGTFHLGF+ N DPEPGRCRRTDGKKWR
Sbjct: 208 PPSSFGWGTFHLGFAGGNMDPEPGRCRRTDGKKWR 242
>AT2G22840.1 | Symbols: AtGRF1 | AtGRF1 (GROWTH-REGULATING FACTOR
1); transcription activator | chr2:9728841-9731141
FORWARD
Length = 530
Score = 104 bits (260), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 58/98 (59%), Positives = 70/98 (71%), Gaps = 9/98 (9%)
Query: 1 NMHG-VFTEARGPFTPSQWMELEHQALIYKYITANVPIPSNLLIPIRKALDSAXXXXXXX 59
NMHG + T +GPF+ +QW ELE QALIYKYITANVP+PS+LL+ ++K+
Sbjct: 121 NMHGNLLTGVKGPFSLTQWAELEQQALIYKYITANVPVPSSLLLSLKKSF-------FPY 173
Query: 60 XXXRPNTLPWGTFHLGFS-NNTDPEPGRCRRTDGKKWR 96
PN+ WG+FHLGFS N DPEPGRCRRTDGKKWR
Sbjct: 174 GSLPPNSFGWGSFHLGFSGGNMDPEPGRCRRTDGKKWR 211
>AT3G13960.1 | Symbols: AtGRF5 | AtGRF5 (GROWTH-REGULATING FACTOR
5); transcription activator | chr3:4608526-4610160
FORWARD
Length = 397
Score = 104 bits (260), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 48/90 (53%), Positives = 60/90 (66%), Gaps = 4/90 (4%)
Query: 7 TEARGPFTPSQWMELEHQALIYKYITANVPIPSNLLIPIRKALDSAXXXXXXXXXXRPNT 66
T R PFTP+QW ELEHQALIYKY+ + VP+P L+ IR++LD++ +
Sbjct: 11 TIGRPPFTPTQWEELEHQALIYKYMVSGVPVPPELIFSIRRSLDTSLVSRLLPH----QS 66
Query: 67 LPWGTFHLGFSNNTDPEPGRCRRTDGKKWR 96
L WG + +GF DPEPGRCRRTDGKKWR
Sbjct: 67 LGWGCYQMGFGRKPDPEPGRCRRTDGKKWR 96
>AT2G06200.1 | Symbols: AtGRF6 | AtGRF6 (GROWTH-REGULATING FACTOR
6); transcription activator | chr2:2426340-2427255
FORWARD
Length = 244
Score = 80.9 bits (198), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/93 (45%), Positives = 54/93 (58%), Gaps = 5/93 (5%)
Query: 9 ARGPFTPSQWMELEHQALIYKYITANVPIPSNLLIPIRKAL--DSAXXXXXXXXXXRPNT 66
R PFT SQW ELE+QAL++KY+ AN+P+P +LL I++ S+ P
Sbjct: 3 TRIPFTESQWEELENQALVFKYLAANMPVPPHLLFLIKRPFLFSSSSSSSSSSSFFSPTL 62
Query: 67 LP---WGTFHLGFSNNTDPEPGRCRRTDGKKWR 96
P W + +G D EPGRCRRTDGKKWR
Sbjct: 63 SPHFGWNVYEMGMGRKIDAEPGRCRRTDGKKWR 95
>AT2G36400.1 | Symbols: AtGRF3 | AtGRF3 (GROWTH-REGULATING FACTOR
3); transcription activator | chr2:15270300-15272617
REVERSE
Length = 398
Score = 71.6 bits (174), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 41/86 (47%), Positives = 53/86 (61%), Gaps = 5/86 (5%)
Query: 13 FTPSQWMELEHQALIYKYITANVPIPSNLLIPIRKAL--DSAXXXXXXXXXXRPNTLPWG 70
F+ +QW ELE QALIY+Y+ A +P LL+PI+K+L S P+ P
Sbjct: 77 FSWAQWQELELQALIYRYMLAGAAVPQELLLPIKKSLLHLSPSYFLHHPLQHLPHYQP-- 134
Query: 71 TFHLGFSNNTDPEPGRCRRTDGKKWR 96
++LG + DPEPGRCRRTDGKKWR
Sbjct: 135 AWYLGRA-AMDPEPGRCRRTDGKKWR 159
>AT3G52910.1 | Symbols: AtGRF4 | AtGRF4 (GROWTH-REGULATING FACTOR
4); transcription activator | chr3:19616177-19618268
REVERSE
Length = 380
Score = 68.9 bits (167), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 50/90 (55%), Gaps = 12/90 (13%)
Query: 13 FTPSQWMELEHQALIYKYITANVPIPSNLLIPIRKALDSAXXXXXXXXXXR---PNTLP- 68
F+ +QW ELE QALIY+Y+ A +P LL+PI+K+L + P+ P
Sbjct: 83 FSWAQWQELELQALIYRYMLAGASVPQELLLPIKKSLLHQSPMHFLHHPLQHSFPHHQPS 142
Query: 69 --WGTFHLGFSNNTDPEPGRCRRTDGKKWR 96
WG DPEPGRC+RTDGKKWR
Sbjct: 143 WYWGR------GAMDPEPGRCKRTDGKKWR 166
>AT2G45480.1 | Symbols: AtGRF9 | AtGRF9 (GROWTH-REGULATING FACTOR
9); transcription activator | chr2:18745583-18747403
FORWARD
Length = 429
Score = 50.8 bits (120), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 16 SQWMELEHQALIYKYITANVPIPSNLLIPIRKALDSAXXXXXXXXXXRPNTLPWGTFHLG 75
+Q ME QAL+Y+YI A + +P +L++PI +L + + G H+
Sbjct: 26 AQLMEFRMQALVYRYIEAGLRVPHHLVVPIWNSLALSSSSNYNYHSSSLLSNK-GVTHI- 83
Query: 76 FSNNTDPEPGRCRRTDGKKWR 96
+ + EP RCRRTDGKKWR
Sbjct: 84 --DTLETEPTRCRRTDGKKWR 102