Jatropha Genome Database

JcCB0781371.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0781371.10 + phase: 0 /pseudo/partial
         (87 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G73430.2 | Symbols:  | sec34-like family protein | chr1:27604...   127   1e-30
AT1G73430.1 | Symbols:  | sec34-like family protein | chr1:27604...   127   1e-30

>AT1G73430.2 | Symbols:  | sec34-like family protein |
           chr1:27604096-27610829 FORWARD
          Length = 784

 Score =  127 bits (319), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 61/74 (82%), Positives = 69/74 (93%)

Query: 1   ELEKSLKATCEEFIMSVTKLIVDPMLSFATKVTAVKVALSSGSQNQKVESIMAKPLKDQA 60
           ELEK LK TCEEFIMSVTKL+VDPMLSF TKVTA+KVALSSG+QN KV+S+MAKPLK+QA
Sbjct: 636 ELEKCLKTTCEEFIMSVTKLVVDPMLSFVTKVTAIKVALSSGTQNHKVDSVMAKPLKEQA 695

Query: 61  FASPEKVAELVQKV 74
           FA+P+KV ELVQKV
Sbjct: 696 FATPDKVVELVQKV 709


>AT1G73430.1 | Symbols:  | sec34-like family protein |
           chr1:27604096-27610829 FORWARD
          Length = 784

 Score =  127 bits (319), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 61/74 (82%), Positives = 69/74 (93%)

Query: 1   ELEKSLKATCEEFIMSVTKLIVDPMLSFATKVTAVKVALSSGSQNQKVESIMAKPLKDQA 60
           ELEK LK TCEEFIMSVTKL+VDPMLSF TKVTA+KVALSSG+QN KV+S+MAKPLK+QA
Sbjct: 636 ELEKCLKTTCEEFIMSVTKLVVDPMLSFVTKVTAIKVALSSGTQNHKVDSVMAKPLKEQA 695

Query: 61  FASPEKVAELVQKV 74
           FA+P+KV ELVQKV
Sbjct: 696 FATPDKVVELVQKV 709