Jatropha Genome Database

JcCB0779721.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0779721.10 - phase: 0 
         (92 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G49180.1 | Symbols: RID3 | RID3 (ROOT INITIATION DEFECTIVE 3)...    54   2e-08

>AT3G49180.1 | Symbols: RID3 | RID3 (ROOT INITIATION DEFECTIVE 3);
          nucleotide binding | chr3:18229810-18231874 FORWARD
          Length = 438

 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 2/68 (2%)

Query: 8  LVACSDRSMGTGITVWDLETGDRLMHIPTCASPAHGLLCLRDQFLVASQVNKHGSVGGGA 67
          +   +  S+  GI  WDL+TG   +    CASPAHGL  + ++FL +SQ++   +   G+
Sbjct: 3  ITVIASSSIDEGIGSWDLKTGTEQLQFKPCASPAHGLTAVGEKFLASSQLSARNT--SGS 60

Query: 68 IFIWQLNK 75
          IF W   K
Sbjct: 61 IFYWSWTK 68