Jatropha Genome Database

JcCB0778081.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0778081.10 - phase: 0 /partial
         (74 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G09810.1 | Symbols:  | isocitrate dehydrogenase, putative / N...   103   2e-23
AT5G03290.1 | Symbols:  | isocitrate dehydrogenase, putative / N...   102   6e-23
AT4G35260.1 | Symbols: IDH1 | IDH1 (ISOCITRATE DEHYDROGENASE 1);...    72   5e-14
AT4G35650.1 | Symbols:  | isocitrate dehydrogenase, putative / N...    67   2e-12
AT2G17130.2 | Symbols: IDH2 | IDH2 (ISOCITRATE DEHYDROGENASE SUB...    67   2e-12
AT2G17130.1 | Symbols: IDH2 | IDH2 (ISOCITRATE DEHYDROGENASE SUB...    67   2e-12

>AT3G09810.1 | Symbols:  | isocitrate dehydrogenase, putative / NAD+
           isocitrate dehydrogenase, putative |
           chr3:3008753-3011070 FORWARD
          Length = 374

 Score =  103 bits (257), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 48/63 (76%), Positives = 57/63 (90%)

Query: 12  NMANPTALLLSAVTMLRHLELHDKADRIQNAILKTIAEGKYRTADLGGKSSTTDFTKAIC 71
           N+ANPTALLLS V MLRHL+L+ +A++I +AI+ TIAEGKYRTADLGG S+TTDFTKAIC
Sbjct: 312 NLANPTALLLSGVMMLRHLKLNKQAEQIHSAIINTIAEGKYRTADLGGSSTTTDFTKAIC 371

Query: 72  DHL 74
           DHL
Sbjct: 372 DHL 374


>AT5G03290.1 | Symbols:  | isocitrate dehydrogenase, putative / NAD+
           isocitrate dehydrogenase, putative | chr5:794043-795939
           FORWARD
          Length = 374

 Score =  102 bits (253), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 46/64 (71%), Positives = 58/64 (90%)

Query: 11  QNMANPTALLLSAVTMLRHLELHDKADRIQNAILKTIAEGKYRTADLGGKSSTTDFTKAI 70
           +N+ANPTALLLS V MLRHL+ +++A++I +AI+ TIAEGKYRTADLGG S+TT+FTKAI
Sbjct: 311 KNLANPTALLLSGVMMLRHLKFNEQAEQIHSAIINTIAEGKYRTADLGGSSTTTEFTKAI 370

Query: 71  CDHL 74
           CDHL
Sbjct: 371 CDHL 374


>AT4G35260.1 | Symbols: IDH1 | IDH1 (ISOCITRATE DEHYDROGENASE 1);
           isocitrate dehydrogenase (NAD+)/ oxidoreductase, acting
           on the CH-OH group of donors, NAD or NADP as acceptor |
           chr4:16774494-16776233 REVERSE
          Length = 367

 Score = 72.4 bits (176), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 35/67 (52%), Positives = 45/67 (67%)

Query: 8   VVCQNMANPTALLLSAVTMLRHLELHDKADRIQNAILKTIAEGKYRTADLGGKSSTTDFT 67
           +V +N ANP ALLLS+  MLRHL+    ADR++ A+ K IAEGK RT DLGG S+T +  
Sbjct: 300 IVLENKANPVALLLSSAMMLRHLQFPSFADRLETAVKKVIAEGKCRTKDLGGTSTTQEVV 359

Query: 68  KAICDHL 74
            A+   L
Sbjct: 360 DAVIAKL 366


>AT4G35650.1 | Symbols:  | isocitrate dehydrogenase, putative / NAD+
           isocitrate dehydrogenase, putative |
           chr4:16908584-16909973 FORWARD
          Length = 368

 Score = 67.4 bits (163), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/63 (50%), Positives = 41/63 (65%)

Query: 8   VVCQNMANPTALLLSAVTMLRHLELHDKADRIQNAILKTIAEGKYRTADLGGKSSTTDFT 67
           +V Q  ANP ALLLS+  MLRHL     ADR++ A+ + I EGKYRT DLGG  +T +  
Sbjct: 301 MVEQKKANPVALLLSSAMMLRHLRFPTFADRLETAVKQVIKEGKYRTKDLGGDCTTQEVV 360

Query: 68  KAI 70
            A+
Sbjct: 361 DAV 363


>AT2G17130.2 | Symbols: IDH2 | IDH2 (ISOCITRATE DEHYDROGENASE
           SUBUNIT 2); isocitrate dehydrogenase (NAD+)/
           oxidoreductase, acting on the CH-OH group of donors, NAD
           or NADP as acceptor | chr2:7461062-7462466 REVERSE
          Length = 363

 Score = 67.4 bits (163), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/64 (50%), Positives = 42/64 (65%)

Query: 11  QNMANPTALLLSAVTMLRHLELHDKADRIQNAILKTIAEGKYRTADLGGKSSTTDFTKAI 70
           Q  ANP ALLLS+  MLRHL+    ADR++ A+ + IAEG  RT DLGG S+T +   A+
Sbjct: 299 QKNANPVALLLSSAMMLRHLQFPSFADRLETAVKRVIAEGNCRTEDLGGNSTTQEVVDAV 358

Query: 71  CDHL 74
             +L
Sbjct: 359 IANL 362


>AT2G17130.1 | Symbols: IDH2 | IDH2 (ISOCITRATE DEHYDROGENASE
           SUBUNIT 2); isocitrate dehydrogenase (NAD+)/
           oxidoreductase, acting on the CH-OH group of donors, NAD
           or NADP as acceptor | chr2:7461062-7462466 REVERSE
          Length = 367

 Score = 67.4 bits (163), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/64 (50%), Positives = 42/64 (65%)

Query: 11  QNMANPTALLLSAVTMLRHLELHDKADRIQNAILKTIAEGKYRTADLGGKSSTTDFTKAI 70
           Q  ANP ALLLS+  MLRHL+    ADR++ A+ + IAEG  RT DLGG S+T +   A+
Sbjct: 303 QKNANPVALLLSSAMMLRHLQFPSFADRLETAVKRVIAEGNCRTEDLGGNSTTQEVVDAV 362

Query: 71  CDHL 74
             +L
Sbjct: 363 IANL 366