Jatropha Genome Database

JcCB0771211.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0771211.10 + phase: 0 /pseudo/partial
         (114 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G70280.1 | Symbols:  | NHL repeat-containing protein | chr1:2...    86   4e-18
AT1G70280.2 | Symbols:  | NHL repeat-containing protein | chr1:2...    86   7e-18
AT1G23880.1 | Symbols:  | NHL repeat-containing protein | chr1:8...    81   2e-16
AT5G14890.1 | Symbols:  | NHL repeat-containing protein | chr5:4...    49   5e-07

>AT1G70280.1 | Symbols:  | NHL repeat-containing protein |
           chr1:26466086-26468116 REVERSE
          Length = 447

 Score = 85.9 bits (211), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 36/42 (85%), Positives = 39/42 (92%)

Query: 4   YIGSSCSLLVIDRGNRAIREIQLHFDDCAYQYGTGFPFGCNV 45
           Y+GSSCSLLVIDRGN+AIREIQLHFDDCAYQYG+GFP G  V
Sbjct: 144 YVGSSCSLLVIDRGNKAIREIQLHFDDCAYQYGSGFPLGIAV 185


>AT1G70280.2 | Symbols:  | NHL repeat-containing protein |
           chr1:26466086-26468471 REVERSE
          Length = 509

 Score = 85.5 bits (210), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 36/42 (85%), Positives = 39/42 (92%)

Query: 4   YIGSSCSLLVIDRGNRAIREIQLHFDDCAYQYGTGFPFGCNV 45
           Y+GSSCSLLVIDRGN+AIREIQLHFDDCAYQYG+GFP G  V
Sbjct: 206 YVGSSCSLLVIDRGNKAIREIQLHFDDCAYQYGSGFPLGIAV 247


>AT1G23880.1 | Symbols:  | NHL repeat-containing protein |
           chr1:8436125-8438636 FORWARD
          Length = 545

 Score = 80.9 bits (198), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 36/48 (75%), Positives = 40/48 (83%)

Query: 4   YIGSSCSLLVIDRGNRAIREIQLHFDDCAYQYGTGFPFGCNVEWEQLF 51
           Y+GSSCSLLVIDRGN+AIREIQLHFDDCA QYG+GFP G  V    +F
Sbjct: 268 YLGSSCSLLVIDRGNQAIREIQLHFDDCADQYGSGFPLGIAVLVAAVF 315


>AT5G14890.1 | Symbols:  | NHL repeat-containing protein |
           chr5:4818056-4821534 FORWARD
          Length = 754

 Score = 49.3 bits (116), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 21/29 (72%), Positives = 25/29 (86%)

Query: 4   YIGSSCSLLVIDRGNRAIREIQLHFDDCA 32
           Y+ SSCSLLVIDRGN+ I+EIQLH  DC+
Sbjct: 211 YVSSSCSLLVIDRGNQLIKEIQLHDHDCS 239