Jatropha Genome Database

JcCB0762681.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0762681.10 + phase: 0 /partial
         (107 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G16070.1 | Symbols:  | chaperonin, putative | chr5:5247549-52...   165   4e-42
AT3G02530.1 | Symbols:  | chaperonin, putative | chr3:528806-532...   165   6e-42
AT5G20890.1 | Symbols:  | chaperonin, putative | chr5:7087020-70...    57   2e-09
AT3G11830.1 | Symbols:  | chaperonin, putative | chr3:3732734-37...    52   9e-08
AT3G20050.1 | Symbols: ATTCP-1 | ATTCP-1; ATP binding / protein ...    45   8e-06

>AT5G16070.1 | Symbols:  | chaperonin, putative |
           chr5:5247549-5251050 REVERSE
          Length = 535

 Score =  165 bits (418), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 77/99 (77%), Positives = 91/99 (91%)

Query: 1   GAGAFEFAARKYLINEVKKTVKGRAQLGVEAFADALLVVPKTLAENSGLDTQDEIVALTG 60
           GAGAFE AAR++L+NEVKKTV+GRAQLGVEAFA+ALLVVPKTLAEN+GLDTQD I++LT 
Sbjct: 412 GAGAFEVAARQHLLNEVKKTVQGRAQLGVEAFANALLVVPKTLAENAGLDTQDVIISLTS 471

Query: 61  EHDRDNIVGINLQTGGALDPQMEGIFDNYSVKRQIINSG 99
           EHD+ N+VG+NLQ G  +DPQ+ GIFDNYSVKRQ+INSG
Sbjct: 472 EHDKGNVVGLNLQDGEPIDPQLAGIFDNYSVKRQLINSG 510


>AT3G02530.1 | Symbols:  | chaperonin, putative | chr3:528806-532457
           REVERSE
          Length = 535

 Score =  165 bits (417), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 78/99 (78%), Positives = 91/99 (91%)

Query: 1   GAGAFEFAARKYLINEVKKTVKGRAQLGVEAFADALLVVPKTLAENSGLDTQDEIVALTG 60
           GAGAFE AAR++LINEVKKTV+GRAQLGVEAFA+ALLVVPKTLAEN+GLDTQD I++LT 
Sbjct: 413 GAGAFEVAARQHLINEVKKTVQGRAQLGVEAFANALLVVPKTLAENAGLDTQDVIISLTS 472

Query: 61  EHDRDNIVGINLQTGGALDPQMEGIFDNYSVKRQIINSG 99
           EHD+ NIVG++LQ G  +DPQ+ GIFDNYSVKRQ+INSG
Sbjct: 473 EHDKGNIVGLDLQDGEPVDPQLAGIFDNYSVKRQLINSG 511


>AT5G20890.1 | Symbols:  | chaperonin, putative |
           chr5:7087020-7089906 REVERSE
          Length = 527

 Score = 57.0 bits (136), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 52/87 (59%), Gaps = 1/87 (1%)

Query: 14  INEVKKTVKGRAQLGVEAFADALLVVPKTLAENSGLDTQDEIVALTGEHDRDNI-VGINL 72
           ++E+ +   G+    +EAF+ AL+ +P T+A+N+GLD+ + +  L  EH  +    GI++
Sbjct: 416 VDELARKTAGKKSHAIEAFSRALVAIPTTIADNAGLDSAELVAQLRAEHHTEGCNAGIDV 475

Query: 73  QTGGALDPQMEGIFDNYSVKRQIINSG 99
            TG   D +  GI++ + VK+ ++ S 
Sbjct: 476 ITGAVGDMEERGIYEAFKVKQAVLLSA 502


>AT3G11830.1 | Symbols:  | chaperonin, putative |
           chr3:3732734-3736156 FORWARD
          Length = 557

 Score = 52.0 bits (123), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 54/103 (52%), Gaps = 5/103 (4%)

Query: 1   GAGAFEFAARKYLINEVKKTVKGRAQLGVEAFADALLVVPKTLAENSGLDTQDEIVALTG 60
           G GA +    KYL  +  +T+ G++QL + ++A AL V+P+ L +N+G D  D +  L  
Sbjct: 411 GGGAIDMEISKYL-RQHSRTIAGKSQLFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQ 469

Query: 61  EHDRDN----IVGINLQTGGALDPQMEGIFDNYSVKRQIINSG 99
           +H   +      G+++ TGG  D     +++   VK   IN+ 
Sbjct: 470 KHAMQSGEGASYGVDINTGGIADSFANFVWEPAVVKINAINAA 512


>AT3G20050.1 | Symbols: ATTCP-1 | ATTCP-1; ATP binding / protein
           binding / unfolded protein binding |
           chr3:6998544-7002266 REVERSE
          Length = 545

 Score = 45.1 bits (105), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 1   GAGAFEFAARKYLINEVKKTVKGRAQLGVEAFADALLVVPKTLAENSGLDTQDEIVALTG 60
           G GA E A   YL   +  T+  R QL +  FADALL++PK LA N+  D  + +  L  
Sbjct: 414 GGGAVESALSVYL-EHLATTLGSREQLAIAEFADALLIIPKVLAVNAAKDATELVAKLRA 472

Query: 61  EH 62
            H
Sbjct: 473 YH 474