Jatropha Genome Database

JcCB0762671.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0762671.10 - phase: 0 /partial
         (82 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G13710.2 | Symbols: SMT1, CPH | SMT1 (STEROL METHYLTRANSFERAS...    78   1e-15
AT5G13710.1 | Symbols: SMT1, CPH | SMT1 (STEROL METHYLTRANSFERAS...    78   1e-15

>AT5G13710.2 | Symbols: SMT1, CPH | SMT1 (STEROL METHYLTRANSFERASE
           1); sterol 24-C-methyltransferase | chr5:4424048-4426866
           REVERSE
          Length = 336

 Score = 78.2 bits (191), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/41 (80%), Positives = 35/41 (85%)

Query: 2   KVIWSKDLATSSPVPWYLPLDKNHFSFSSFRLTALGRFSQK 42
           +VIW KDLA  SPVPWYLPLDKNHFS SSFRLTA+GRF  K
Sbjct: 245 EVIWEKDLAKDSPVPWYLPLDKNHFSLSSFRLTAVGRFITK 285


>AT5G13710.1 | Symbols: SMT1, CPH | SMT1 (STEROL METHYLTRANSFERASE
           1); sterol 24-C-methyltransferase | chr5:4424048-4426866
           REVERSE
          Length = 336

 Score = 78.2 bits (191), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/41 (80%), Positives = 35/41 (85%)

Query: 2   KVIWSKDLATSSPVPWYLPLDKNHFSFSSFRLTALGRFSQK 42
           +VIW KDLA  SPVPWYLPLDKNHFS SSFRLTA+GRF  K
Sbjct: 245 EVIWEKDLAKDSPVPWYLPLDKNHFSLSSFRLTAVGRFITK 285