Jatropha Genome Database

JcCB0762541.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0762541.10 + phase: 2 /partial
         (69 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G35785.3 | Symbols:  | nucleic acid binding / nucleotide bind...   114   2e-26
AT4G35785.2 | Symbols:  | nucleic acid binding / nucleotide bind...   112   4e-26
AT4G35785.1 | Symbols:  | nucleic acid binding / nucleotide bind...   112   4e-26
AT1G07350.2 | Symbols:  | transformer serine/arginine-rich ribon...    98   9e-22
AT1G07350.1 | Symbols:  | transformer serine/arginine-rich ribon...    94   2e-20
AT5G04280.1 | Symbols:  | glycine-rich RNA-binding protein | chr...    52   8e-08
AT1G60650.2 | Symbols:  | glycine-rich RNA-binding protein, puta...    50   2e-07
AT1G60650.1 | Symbols:  | glycine-rich RNA-binding protein, puta...    50   2e-07
AT1G18630.1 | Symbols: GR-RBP6 | GR-RBP6 (glycine-rich RNA-bindi...    47   4e-06
AT1G49760.1 | Symbols: PAB8, PABP8 | PAB8 (POLY(A) BINDING PROTE...    46   5e-06
AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | RBP31 (31...    45   7e-06

>AT4G35785.3 | Symbols:  | nucleic acid binding / nucleotide binding
           | chr4:16953708-16955127 REVERSE
          Length = 207

 Score =  114 bits (284), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 50/65 (76%), Positives = 60/65 (92%)

Query: 5   NPGNTLYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDNVEAANR 64
           NPG TLYVTGLSTRVT++DLE HF+KEGKVASCFLV+EPRTR+SRGFAFVTM +++ A R
Sbjct: 69  NPGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAER 128

Query: 65  CVKHL 69
           C+K+L
Sbjct: 129 CIKYL 133


>AT4G35785.2 | Symbols:  | nucleic acid binding / nucleotide binding
           | chr4:16953211-16955127 REVERSE
          Length = 239

 Score =  112 bits (281), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 50/65 (76%), Positives = 60/65 (92%)

Query: 5   NPGNTLYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDNVEAANR 64
           NPG TLYVTGLSTRVT++DLE HF+KEGKVASCFLV+EPRTR+SRGFAFVTM +++ A R
Sbjct: 69  NPGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAER 128

Query: 65  CVKHL 69
           C+K+L
Sbjct: 129 CIKYL 133


>AT4G35785.1 | Symbols:  | nucleic acid binding / nucleotide binding
           | chr4:16953211-16955127 REVERSE
          Length = 238

 Score =  112 bits (281), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 50/65 (76%), Positives = 60/65 (92%)

Query: 5   NPGNTLYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDNVEAANR 64
           NPG TLYVTGLSTRVT++DLE HF+KEGKVASCFLV+EPRTR+SRGFAFVTM +++ A R
Sbjct: 68  NPGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAER 127

Query: 65  CVKHL 69
           C+K+L
Sbjct: 128 CIKYL 132


>AT1G07350.2 | Symbols:  | transformer serine/arginine-rich
           ribonucleoprotein, putative | chr1:2258816-2259586
           REVERSE
          Length = 129

 Score = 98.2 bits (243), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 45/68 (66%), Positives = 55/68 (80%)

Query: 2   DAINPGNTLYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDNVEA 61
           DA NPGN+LYVTGLS RVTERDLE+HF+KEGKV    LV++P TR SRGF F++M +V  
Sbjct: 39  DAENPGNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGD 98

Query: 62  ANRCVKHL 69
           ANRC++ L
Sbjct: 99  ANRCIRSL 106


>AT1G07350.1 | Symbols:  | transformer serine/arginine-rich
           ribonucleoprotein, putative | chr1:2257732-2260101
           REVERSE
          Length = 382

 Score = 93.6 bits (231), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/68 (66%), Positives = 55/68 (80%)

Query: 2   DAINPGNTLYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDNVEA 61
           DA NPGN+LYVTGLS RVTERDLE+HF+KEGKV    LV++P TR SRGF F++M +V  
Sbjct: 69  DAENPGNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGD 128

Query: 62  ANRCVKHL 69
           ANRC++ L
Sbjct: 129 ANRCIRSL 136


>AT5G04280.1 | Symbols:  | glycine-rich RNA-binding protein |
          chr5:1192461-1195413 FORWARD
          Length = 310

 Score = 52.0 bits (123), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 40/67 (59%)

Query: 3  AINPGNTLYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDNVEAA 62
          A   G+ ++V GLS  VT+RDLE  FS+ G +  C +++E  T  SRGF F+T  +  A 
Sbjct: 2  AAKEGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAM 61

Query: 63 NRCVKHL 69
          +  ++ +
Sbjct: 62 DESIREM 68


>AT1G60650.2 | Symbols:  | glycine-rich RNA-binding protein,
          putative | chr1:22340089-22342148 FORWARD
          Length = 292

 Score = 50.4 bits (119), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 3/71 (4%)

Query: 2  DAINPGN---TLYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDN 58
          D  N GN    ++V GLS  VTER LE  F + GK+  C ++V   T   RGF F+T  +
Sbjct: 3  DRENDGNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTD 62

Query: 59 VEAANRCVKHL 69
             A+  +KH+
Sbjct: 63 RRGADDAIKHM 73


>AT1G60650.1 | Symbols:  | glycine-rich RNA-binding protein,
          putative | chr1:22340089-22342148 FORWARD
          Length = 292

 Score = 50.4 bits (119), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 3/71 (4%)

Query: 2  DAINPGN---TLYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDN 58
          D  N GN    ++V GLS  VTER LE  F + GK+  C ++V   T   RGF F+T  +
Sbjct: 3  DRENDGNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTD 62

Query: 59 VEAANRCVKHL 69
             A+  +KH+
Sbjct: 63 RRGADDAIKHM 73


>AT1G18630.1 | Symbols: GR-RBP6 | GR-RBP6 (glycine-rich
          RNA-binding protein 6); RNA binding / nucleic acid
          binding / nucleotide binding | chr1:6415226-6416283
          FORWARD
          Length = 155

 Score = 46.6 bits (109), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 35/60 (58%)

Query: 10 LYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDNVEAANRCVKHL 69
          ++V GLS       L+E F   GK+    +V++  + +SRGF FVT D++E AN  ++ +
Sbjct: 38 IFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQAM 97


>AT1G49760.1 | Symbols: PAB8, PABP8 | PAB8 (POLY(A) BINDING PROTEIN
           8); RNA binding / translation initiation factor |
           chr1:18416740-18419753 FORWARD
          Length = 671

 Score = 45.8 bits (107), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 1/63 (1%)

Query: 7   GNTLYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDNVEAANRCV 66
           G+ LYV  L   VT+  L EHF+  G + SC ++ +P + +SRG  FV     E A R +
Sbjct: 326 GSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDP-SGVSRGSGFVAFSTPEEATRAI 384

Query: 67  KHL 69
             +
Sbjct: 385 TEM 387


>AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | RBP31
           (31-KDA RNA BINDING PROTEIN); RNA binding / poly(U)
           binding | chr4:12766223-12767952 REVERSE
          Length = 329

 Score = 45.4 bits (106), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 34/69 (49%)

Query: 1   PDAINPGNTLYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDNVE 60
           P    P   +YV  L   V    LE+ FS+ GKV    +V +  T  SRGF FVTM +V+
Sbjct: 237 PRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVD 296

Query: 61  AANRCVKHL 69
             N  +  L
Sbjct: 297 ELNEAISAL 305