Jatropha Genome Database
- JcCB0760911.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0760911.10 - phase: 0 /partial
(68 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G12680.1 | Symbols: HUA1 | HUA1 (ENHANCER OF AG-4 1); RNA bin... 69 5e-13
AT3G02830.1 | Symbols: ZFN1 | ZFN1 (ZINC FINGER PROTEIN 1); DNA ... 51 1e-07
AT5G16540.1 | Symbols: ZFN3 | ZFN3 (ZINC FINGER NUCLEASE 3); DNA... 51 2e-07
AT5G16540.3 | Symbols: ZFN3 | ZFN3 (ZINC FINGER NUCLEASE 3); DNA... 50 2e-07
AT5G16540.2 | Symbols: ZFN3 | ZFN3 (ZINC FINGER NUCLEASE 3); DNA... 50 3e-07
AT5G18550.1 | Symbols: | nucleic acid binding / zinc ion bindin... 49 8e-07
AT2G47850.2 | Symbols: | zinc finger (CCCH-type) family protein... 49 1e-06
AT2G47850.3 | Symbols: | zinc finger (CCCH-type) family protein... 48 1e-06
AT2G47850.1 | Symbols: | zinc finger (CCCH-type) family protein... 48 1e-06
>AT3G12680.1 | Symbols: HUA1 | HUA1 (ENHANCER OF AG-4 1); RNA
binding | chr3:4025276-4028999 REVERSE
Length = 524
Score = 69.3 bits (168), Expect = 5e-13, Method: Composition-based stats.
Identities = 36/47 (76%), Positives = 39/47 (82%), Gaps = 3/47 (6%)
Query: 1 FYMKTGECKFGERCKFHHPINR-SAPT-QAEQQA-VKLTLAGLPRRE 44
+YMKTGECKFGERCKFHHP +R SA T QA QQ VKL+LAG PRRE
Sbjct: 428 YYMKTGECKFGERCKFHHPADRLSAMTKQAPQQPNVKLSLAGYPRRE 474
Score = 47.0 bits (110), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 25/41 (60%)
Query: 1 FYMKTGECKFGERCKFHHPINRSAPTQAEQQAVKLTLAGLP 41
FYMKTG+CKFG CKFHHP + P+ ++ + L P
Sbjct: 276 FYMKTGKCKFGLSCKFHHPKDIQLPSSSQDIGSSVGLTSEP 316
>AT3G02830.1 | Symbols: ZFN1 | ZFN1 (ZINC FINGER PROTEIN 1); DNA
binding / nuclease/ nucleic acid binding |
chr3:614075-615916 FORWARD
Length = 397
Score = 51.2 bits (121), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/43 (55%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
Query: 1 FYMKTGECKFGERCKFHHPINRSAPTQAEQQAVKLTLAGLPRR 43
FYMKTG+CKFG CKFHHP +R AP L+ GLP R
Sbjct: 282 FYMKTGDCKFGTVCKFHHPRDRQAPP----PDCLLSSIGLPLR 320
>AT5G16540.1 | Symbols: ZFN3 | ZFN3 (ZINC FINGER NUCLEASE 3); DNA
binding / nuclease/ nucleic acid binding |
chr5:5403437-5405034 FORWARD
Length = 375
Score = 50.8 bits (120), Expect = 2e-07, Method: Composition-based stats.
Identities = 23/43 (53%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 1 FYMKTGECKFGERCKFHHPINRSAPTQAEQQAVKLTLAGLPRR 43
FYMKTG+CKFG CKFHHP +R P L+ GLP R
Sbjct: 251 FYMKTGDCKFGTVCKFHHPRDRQTPP----PDCVLSSVGLPLR 289
>AT5G16540.3 | Symbols: ZFN3 | ZFN3 (ZINC FINGER NUCLEASE 3); DNA
binding / nuclease/ nucleic acid binding |
chr5:5403598-5405034 FORWARD
Length = 354
Score = 50.4 bits (119), Expect = 2e-07, Method: Composition-based stats.
Identities = 23/43 (53%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 1 FYMKTGECKFGERCKFHHPINRSAPTQAEQQAVKLTLAGLPRR 43
FYMKTG+CKFG CKFHHP +R P L+ GLP R
Sbjct: 230 FYMKTGDCKFGTVCKFHHPRDRQTPP----PDCVLSSVGLPLR 268
>AT5G16540.2 | Symbols: ZFN3 | ZFN3 (ZINC FINGER NUCLEASE 3); DNA
binding / nuclease/ nucleic acid binding |
chr5:5403437-5405034 FORWARD
Length = 368
Score = 50.1 bits (118), Expect = 3e-07, Method: Composition-based stats.
Identities = 18/25 (72%), Positives = 20/25 (80%)
Query: 1 FYMKTGECKFGERCKFHHPINRSAP 25
FYMKTG+CKFG CKFHHP +R P
Sbjct: 251 FYMKTGDCKFGTVCKFHHPRDRQTP 275
>AT5G18550.1 | Symbols: | nucleic acid binding / zinc ion binding |
chr5:6160515-6162729 FORWARD
Length = 465
Score = 48.5 bits (114), Expect = 8e-07, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 5/43 (11%)
Query: 1 FYMKTGECKFGERCKFHHPINRSAPTQAEQQAVKLTLAGLPRR 43
++M+TG+CKFG C+FHHP+ ++P +A L+ GLP R
Sbjct: 308 YFMRTGDCKFGTSCRFHHPMEAASP-----EASTLSHIGLPLR 345
>AT2G47850.2 | Symbols: | zinc finger (CCCH-type) family protein |
chr2:19595953-19598119 FORWARD
Length = 442
Score = 48.5 bits (114), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 1 FYMKTGECKFGERCKFHHPINRSAPTQAEQQAVKLTLAGLPRRE 44
FY+KTG CKFG CKFHHP N V L + G P RE
Sbjct: 98 FYLKTGTCKFGASCKFHHPKNAG----GSMSHVPLNIYGYPVRE 137
Score = 48.1 bits (113), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/43 (48%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
Query: 1 FYMKTGECKFGERCKFHHPINRSAPTQAEQQAVKLTLAGLPRR 43
+Y+KTG+CKFG CKFHHP +R P + L+ GLP R
Sbjct: 271 YYLKTGDCKFGTSCKFHHPRDRVPP----RANCVLSPIGLPLR 309
>AT2G47850.3 | Symbols: | zinc finger (CCCH-type) family protein |
chr2:19595953-19598119 FORWARD
Length = 468
Score = 48.1 bits (113), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 1 FYMKTGECKFGERCKFHHPINRSAPTQAEQQAVKLTLAGLPRRE 44
FY+KTG CKFG CKFHHP N V L + G P RE
Sbjct: 98 FYLKTGTCKFGASCKFHHPKNAG----GSMSHVPLNIYGYPVRE 137
Score = 47.8 bits (112), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/43 (48%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
Query: 1 FYMKTGECKFGERCKFHHPINRSAPTQAEQQAVKLTLAGLPRR 43
+Y+KTG+CKFG CKFHHP +R P + L+ GLP R
Sbjct: 297 YYLKTGDCKFGTSCKFHHPRDRVPP----RANCVLSPIGLPLR 335
>AT2G47850.1 | Symbols: | zinc finger (CCCH-type) family protein |
chr2:19595953-19598119 FORWARD
Length = 468
Score = 48.1 bits (113), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 1 FYMKTGECKFGERCKFHHPINRSAPTQAEQQAVKLTLAGLPRRE 44
FY+KTG CKFG CKFHHP N V L + G P RE
Sbjct: 98 FYLKTGTCKFGASCKFHHPKNAG----GSMSHVPLNIYGYPVRE 137
Score = 47.8 bits (112), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/43 (48%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
Query: 1 FYMKTGECKFGERCKFHHPINRSAPTQAEQQAVKLTLAGLPRR 43
+Y+KTG+CKFG CKFHHP +R P + L+ GLP R
Sbjct: 297 YYLKTGDCKFGTSCKFHHPRDRVPP----RANCVLSPIGLPLR 335