Jatropha Genome Database

JcCB0750271.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0750271.10 + phase: 1 /partial
         (96 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G29570.1 | Symbols: PCNA2, ATPCNA2 | PCNA2 (PROLIFERATING CEL...   157   1e-39
AT1G07370.1 | Symbols: PCNA1 | PCNA1 (PROLIFERATING CELLULAR NUC...   155   7e-39

>AT2G29570.1 | Symbols: PCNA2, ATPCNA2 | PCNA2 (PROLIFERATING CELL
           NUCLEAR ANTIGEN 2); DNA binding / DNA polymerase
           processivity factor | chr2:12650139-12651598 REVERSE
          Length = 264

 Score =  157 bits (397), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 77/104 (74%), Positives = 89/104 (85%), Gaps = 8/104 (7%)

Query: 1   QDKISDFEMKLMDIDSEHLGIPEAEYHAIIRMPSAEFAKICRDLASIGDTVVISVSKEGV 60
           QDKI+DFEMKLMDIDSEHLGIP+AEYH+I+RMPS EF++IC+DL+SIGDTVVISV+KEGV
Sbjct: 108 QDKIADFEMKLMDIDSEHLGIPDAEYHSIVRMPSGEFSRICKDLSSIGDTVVISVTKEGV 167

Query: 61  KFSTRGDIGAANVVLRQNTTVDK-----VLSNN---LLSFQLQY 96
           KFST GDIG AN+VLRQNTTVDK     V+  N    LSF L+Y
Sbjct: 168 KFSTAGDIGTANIVLRQNTTVDKPEDAIVIEMNEPVSLSFALRY 211


>AT1G07370.1 | Symbols: PCNA1 | PCNA1 (PROLIFERATING CELLULAR
           NUCLEAR ANTIGEN); DNA binding / DNA polymerase
           processivity factor/ protein binding |
           chr1:2263204-2264382 FORWARD
          Length = 263

 Score =  155 bits (391), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 70/83 (84%), Positives = 80/83 (96%)

Query: 1   QDKISDFEMKLMDIDSEHLGIPEAEYHAIIRMPSAEFAKICRDLASIGDTVVISVSKEGV 60
           QDKI+DFEMKLMDIDSEHLGIP+AEYH+I+RMPS EF++IC+DL+SIGDTVVISV+KEGV
Sbjct: 108 QDKIADFEMKLMDIDSEHLGIPDAEYHSIVRMPSNEFSRICKDLSSIGDTVVISVTKEGV 167

Query: 61  KFSTRGDIGAANVVLRQNTTVDK 83
           KFST GDIG AN+VLRQNTTVDK
Sbjct: 168 KFSTAGDIGTANIVLRQNTTVDK 190