Jatropha Genome Database
- JcCB0746061.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0746061.10 + phase: 0 /partial
(174 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G19170.1 | Symbols: NCED4 | NCED4 (NINE-CIS-EPOXYCAROTENOID D... 242 1e-64
AT3G63520.1 | Symbols: CCD1, ATCCD1, ATNCED1, NCED1 | CCD1 (CARO... 122 1e-28
AT3G14440.1 | Symbols: NCED3, ATNCED3, STO1, SIS7 | NCED3 (NINE-... 100 6e-22
AT1G30100.1 | Symbols: NCED5, ATNCED5 | NCED5 (NINE-CIS-EPOXYCAR... 100 9e-22
AT1G78390.1 | Symbols: NCED9, ATNCED9 | NCED9 (NINE-CIS-EPOXYCAR... 99 2e-21
AT3G24220.1 | Symbols: NCED6, ATNCED6 | NCED6 (NINE-CIS-EPOXYCAR... 85 3e-17
AT4G18350.1 | Symbols: NCED2, ATNCED2 | NCED2 (NINE-CIS-EPOXYCAR... 84 3e-17
>AT4G19170.1 | Symbols: NCED4 | NCED4 (NINE-CIS-EPOXYCAROTENOID
DIOXYGENASE 4) | chr4:10481835-10483622 FORWARD
Length = 595
Score = 242 bits (617), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 116/174 (66%), Positives = 147/174 (84%), Gaps = 4/174 (2%)
Query: 5 FLMVRPVFPPRLWNQQKYAVFADIQIGM--NPVEMIFGGGSPVGLDPTKVPRIGIIPRYA 62
F M P F +++A+FA+IQ+GM N ++++ GGSPVG D K PR+G+IP+YA
Sbjct: 327 FSMTSPSFLHDFAITKRHAIFAEIQLGMRMNMLDLVLEGGSPVGTDNGKTPRLGVIPKYA 386
Query: 63 KDESEMRWFDVPGFNLIHAINAWDEED--AVVILAPNILSAEHTLERMELVHALVEKVRI 120
DESEM+WF+VPGFN+IHAINAWDE+D +VV++APNI+S EHTLERM+LVHALVEKV+I
Sbjct: 387 GDESEMKWFEVPGFNIIHAINAWDEDDGNSVVLIAPNIMSIEHTLERMDLVHALVEKVKI 446
Query: 121 DLKTGIVTRNPVSARNLDFAVINPAYVGKKNKYVYAAIGDPMPKITGVVKLDVS 174
DL TGIV R+P+SARNLDFAVINPA++G+ ++YVYAAIGDPMPKI+GVVKLDVS
Sbjct: 447 DLVTGIVRRHPISARNLDFAVINPAFLGRCSRYVYAAIGDPMPKISGVVKLDVS 500
>AT3G63520.1 | Symbols: CCD1, ATCCD1, ATNCED1, NCED1 | CCD1
(CAROTENOID CLEAVAGE DIOXYGENASE 1);
9-cis-epoxycarotenoid dioxygenase |
chr3:23452940-23455896 FORWARD
Length = 538
Score = 122 bits (306), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 93/160 (58%), Gaps = 6/160 (3%)
Query: 20 QKYAVFADIQIGMNPVEMIFGGGSPVGLDPTKVPRIGIIPRYAKDESEMRWFDVPGFNLI 79
+ YA+F D+ + P EM+ DPTK R G++PRYAKDE +RWF++P +
Sbjct: 276 ETYAIFMDLPMHFRPKEMVKEKKMIYSFDPTKKARFGVLPRYAKDELMIRWFELPNCFIF 335
Query: 80 HAINAWDEEDAVVILAPNI------LSAEHTLERMELVHALVEKVRIDLKTGIVTRNPVS 133
H NAW+EED VV++ + + + E++E + ++R ++KTG ++ +S
Sbjct: 336 HNANAWEEEDEVVLITCRLENPDLDMVSGKVKEKLENFGNELYEMRFNMKTGSASQKKLS 395
Query: 134 ARNLDFAVINPAYVGKKNKYVYAAIGDPMPKITGVVKLDV 173
A +DF IN Y GKK +YVY I D + K+TG++K D+
Sbjct: 396 ASAVDFPRINECYTGKKQRYVYGTILDSIAKVTGIIKFDL 435
>AT3G14440.1 | Symbols: NCED3, ATNCED3, STO1, SIS7 | NCED3
(NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 3);
9-cis-epoxycarotenoid dioxygenase | chr3:4831678-4833477
REVERSE
Length = 599
Score = 100 bits (248), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 92/163 (56%), Gaps = 9/163 (5%)
Query: 20 QKYAVFADIQIGMNPVEMIFGGGSPVGLDPTKVPRIGIIPRYAKDESEMRWFDVPGFNLI 79
+ + V D Q+ EMI GGSPV D KV R GI+ +YA+D S ++W D P
Sbjct: 352 ENFVVVPDQQVVFKLPEMI-RGGSPVVYDKNKVARFGILDKYAEDSSNIKWIDAPDCFCF 410
Query: 80 HAINAWD--EEDAVVILAPNILSAEHTL-ERMELVHALVEKVRIDLKTGIVTRNPVSAR- 135
H NAW+ E D VV++ + + E E + +++ ++R++LKTG TR P+ +
Sbjct: 411 HLWNAWEEPETDEVVVIGSCMTPPDSIFNESDENLKSVLSEIRLNLKTGESTRRPIISNE 470
Query: 136 ----NLDFAVINPAYVGKKNKYVYAAIGDPMPKITGVVKLDVS 174
NL+ ++N +G+K K+ Y A+ +P PK++G K+D++
Sbjct: 471 DQQVNLEAGMVNRNMLGRKTKFAYLALAEPWPKVSGFAKVDLT 513
>AT1G30100.1 | Symbols: NCED5, ATNCED5 | NCED5
(NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 5);
9-cis-epoxycarotenoid dioxygenase |
chr1:10571383-10573152 FORWARD
Length = 589
Score = 99.8 bits (247), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 93/162 (57%), Gaps = 8/162 (4%)
Query: 20 QKYAVFADIQIGMNPVEMIFGGGSPVGLDPTKVPRIGIIPRYAKDESEMRWFDVPGFNLI 79
+ + V D Q+ +M F G SPV D K+ R GI+PR AKD SEM W + P
Sbjct: 342 ENFVVIPDQQVVFKLSDM-FLGKSPVKYDGEKISRFGILPRNAKDASEMVWVESPETFCF 400
Query: 80 HAINAWD--EEDAVVILAPNILSAEHTL-ERMELVHALVEKVRIDLKTGIVTRN---PVS 133
H NAW+ E D VV++ + A+ E E +++++ ++R++LKTG TR P S
Sbjct: 401 HLWNAWESPETDEVVVIGSCMTPADSIFNECDEQLNSVLSEIRLNLKTGKSTRRTIIPGS 460
Query: 134 AR-NLDFAVINPAYVGKKNKYVYAAIGDPMPKITGVVKLDVS 174
+ NL+ ++N +G+K +Y Y AI +P PK++G K+D+S
Sbjct: 461 VQMNLEAGMVNRNLLGRKTRYAYLAIAEPWPKVSGFAKVDLS 502
>AT1G78390.1 | Symbols: NCED9, ATNCED9 | NCED9
(NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 9);
9-cis-epoxycarotenoid dioxygenase |
chr1:29490895-29492868 REVERSE
Length = 657
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 91/160 (56%), Gaps = 6/160 (3%)
Query: 20 QKYAVFADIQIGMNPVEMIFGGGSPVGLDPTKVPRIGIIPRYAKDESEMRWFDVPGFNLI 79
+ + V D Q+ EMI GGSPV D K R GI+ + AKD S ++W +VP
Sbjct: 412 ENFVVIPDQQVVFRLPEMI-RGGSPVVYDEKKKSRFGILNKNAKDASSIQWIEVPDCFCF 470
Query: 80 HAINAWD--EEDAVVILAPNILSAEHTL-ERMELVHALVEKVRIDLKTGIVTRNPVSAR- 135
H N+W+ E D VV++ + + E E + +++ ++R++LKTG TR PV +
Sbjct: 471 HLWNSWEEPETDEVVVIGSCMTPPDSIFNEHDETLQSVLSEIRLNLKTGESTRRPVISEQ 530
Query: 136 -NLDFAVINPAYVGKKNKYVYAAIGDPMPKITGVVKLDVS 174
NL+ ++N +G+K +Y Y A+ +P PK++G K+D+S
Sbjct: 531 VNLEAGMVNRNLLGRKTRYAYLALTEPWPKVSGFAKVDLS 570
>AT3G24220.1 | Symbols: NCED6, ATNCED6 | NCED6
(NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 6);
9-cis-epoxycarotenoid dioxygenase | chr3:8761439-8763172
FORWARD
Length = 577
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 87/162 (53%), Gaps = 8/162 (4%)
Query: 20 QKYAVFADIQIGMNPVEMIFGGGSPVGLDPTKVPRIGIIPRYAKDESEMRWFDVPGFNLI 79
+ + V D Q+ EMI GG SPV K+ R G++ + S++ W DVP
Sbjct: 331 ENFVVIPDQQMVFKLSEMIRGG-SPVIYVKEKMARFGVLSKQDLTGSDINWVDVPDCFCF 389
Query: 80 HAINAWDEE----DAVVILAPNILSAEHTL--ERMELVHALVEKVRIDLKTGIVTRNP-V 132
H NAW+E D V+++ + +S T+ E E + ++R++++T R V
Sbjct: 390 HLWNAWEERTEEGDPVIVVIGSCMSPPDTIFSESGEPTRVELSEIRLNMRTKESNRKVIV 449
Query: 133 SARNLDFAVINPAYVGKKNKYVYAAIGDPMPKITGVVKLDVS 174
+ NL+ IN +YVG+K+++VY AI DP PK +G+ K+D+
Sbjct: 450 TGVNLEAGHINRSYVGRKSQFVYIAIADPWPKCSGIAKVDIQ 491
>AT4G18350.1 | Symbols: NCED2, ATNCED2 | NCED2
(NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 2);
9-cis-epoxycarotenoid dioxygenase |
chr4:10142672-10144423 FORWARD
Length = 583
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 88/161 (54%), Gaps = 7/161 (4%)
Query: 20 QKYAVFADIQIGMNPVEMIFGGGSPVGLDPTKVPRIGIIPRYAKDESEMRWFDVPGFNLI 79
+ + V D Q+ EMI G SPV D KV R+GI+P+ A + S++ W + P
Sbjct: 335 ENFVVIPDQQVVFKLGEMI-SGKSPVVFDGEKVSRLGIMPKDATEASQIIWVNSPETFCF 393
Query: 80 HAINAWD--EEDAVVILAPNILSAEHTL-ERMELVHALVEKVRIDLKTGIVTRNPVSAR- 135
H NAW+ E + +V++ + A+ ER E + +++ ++RI+L+T TR +
Sbjct: 394 HLWNAWESPETEEIVVIGSCMSPADSIFNERDESLRSVLSEIRINLRTRKTTRRSLLVNE 453
Query: 136 --NLDFAVINPAYVGKKNKYVYAAIGDPMPKITGVVKLDVS 174
NL+ ++N +G+K ++ + AI P PK++G K+D+
Sbjct: 454 DVNLEIGMVNRNRLGRKTRFAFLAIAYPWPKVSGFAKVDLC 494