Jatropha Genome Database

JcCB0736301.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0736301.10 - phase: 0 /partial
         (238 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G24150.1 | Symbols: AtGRF8 | AtGRF8 (GROWTH-REGULATING FACTOR...   125   3e-29
AT4G37740.1 | Symbols: AtGRF2 | AtGRF2 (GROWTHREGULATING FACTOR ...   120   5e-28
AT2G22840.1 | Symbols: AtGRF1 | AtGRF1 (GROWTH-REGULATING FACTOR...   110   7e-25
AT3G13960.1 | Symbols: AtGRF5 | AtGRF5 (GROWTH-REGULATING FACTOR...   104   4e-23
AT3G52910.1 | Symbols: AtGRF4 | AtGRF4 (GROWTH-REGULATING FACTOR...    95   3e-20
AT2G36400.1 | Symbols: AtGRF3 | AtGRF3 (GROWTH-REGULATING FACTOR...    94   6e-20
AT2G06200.1 | Symbols: AtGRF6 | AtGRF6 (GROWTH-REGULATING FACTOR...    93   1e-19
AT5G53660.1 | Symbols: AtGRF7 | AtGRF7 (GROWTH-REGULATING FACTOR...    91   4e-19
AT2G45480.1 | Symbols: AtGRF9 | AtGRF9 (GROWTH-REGULATING FACTOR...    65   4e-11

>AT4G24150.1 | Symbols: AtGRF8 | AtGRF8 (GROWTH-REGULATING FACTOR
           8); transcription activator | chr4:12535972-12539387
           FORWARD
          Length = 493

 Score =  125 bits (313), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 96/246 (39%), Positives = 114/246 (46%), Gaps = 55/246 (22%)

Query: 2   GEMNPSSMN--VAVPFTAAQWQELERQTMIYKYMMASVPIPPELLIPITKT-QSNP-PSS 57
           GEM   SMN      F+ AQW ELERQ  IYKYMMASVP+PPELL P  K  QSN  P  
Sbjct: 136 GEMR-RSMNEDAGAAFSEAQWHELERQRNIYKYMMASVPVPPELLTPFPKNHQSNTNPDV 194

Query: 58  QSH--------------------------ALKGSLELGISGCNS----DPEPWRCKRTDG 87
            ++                          A  GSL+LGI+   S    D EPWRCKRTDG
Sbjct: 195 DTYRSGMFSIYADYKNLPLSMWMTVTVAVATGGSLQLGIASSASNNTADLEPWRCKRTDG 254

Query: 88  KKWRCSRDVAPDQKYCEXXXXXXXXXXXXXVE------LHTD------SMAQLLNQKSHF 135
           KKWRCSR+V PDQKYCE             VE       H D        +QL+     F
Sbjct: 255 KKWRCSRNVIPDQKYCERHTHKSRPRSRKHVESSHQSSHHNDIRTAKNDTSQLVRTYPQF 314

Query: 136 PNQTNSHNLSIFRSPTVSAAASYDQSRNLEWFLK-GETVPVASNSNQEWRYLKDG----- 189
             Q  S    +   P  SA++ YD  R L WF K  + +   +   QE   LK G     
Sbjct: 315 YGQPISQIPVLSTLP--SASSPYDHHRGLRWFTKEDDAIGTLNPETQEAVQLKVGSSREL 372

Query: 190 ERVYNY 195
           +R ++Y
Sbjct: 373 KRGFDY 378


>AT4G37740.1 | Symbols: AtGRF2 | AtGRF2 (GROWTHREGULATING FACTOR 2);
           transcription activator | chr4:17725533-17727609 REVERSE
          Length = 535

 Score =  120 bits (302), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 58/98 (59%), Positives = 67/98 (68%), Gaps = 7/98 (7%)

Query: 11  VAVPFTAAQWQELERQTMIYKYMMASVPIPPELLIPITKT----QSNPPSSQSHALKGSL 66
           V  PFT  QW ELE+Q +IYKY+ A+VP+P  LLI I K+     S PPSS      G+ 
Sbjct: 161 VKGPFTLTQWAELEQQALIYKYITANVPVPSSLLISIKKSFYPYGSLPPSSFGW---GTF 217

Query: 67  ELGISGCNSDPEPWRCKRTDGKKWRCSRDVAPDQKYCE 104
            LG +G N DPEP RC+RTDGKKWRCSRD  PDQKYCE
Sbjct: 218 HLGFAGGNMDPEPGRCRRTDGKKWRCSRDAVPDQKYCE 255


>AT2G22840.1 | Symbols: AtGRF1 | AtGRF1 (GROWTH-REGULATING FACTOR
           1); transcription activator | chr2:9728841-9731141
           FORWARD
          Length = 530

 Score =  110 bits (276), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 61/113 (53%), Positives = 74/113 (65%), Gaps = 13/113 (11%)

Query: 2   GEMNPSSMN------VAVPFTAAQWQELERQTMIYKYMMASVPIPPELLIPITKT----Q 51
           G MN S+M+      V  PF+  QW ELE+Q +IYKY+ A+VP+P  LL+ + K+     
Sbjct: 115 GMMNTSNMHGNLLTGVKGPFSLTQWAELEQQALIYKYITANVPVPSSLLLSLKKSFFPYG 174

Query: 52  SNPPSSQSHALKGSLELGISGCNSDPEPWRCKRTDGKKWRCSRDVAPDQKYCE 104
           S PP+S      GS  LG SG N DPEP RC+RTDGKKWRCSRD  PDQKYCE
Sbjct: 175 SLPPNSFGW---GSFHLGFSGGNMDPEPGRCRRTDGKKWRCSRDAVPDQKYCE 224


>AT3G13960.1 | Symbols: AtGRF5 | AtGRF5 (GROWTH-REGULATING FACTOR
           5); transcription activator | chr3:4608526-4610160
           FORWARD
          Length = 397

 Score =  104 bits (260), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 49/95 (51%), Positives = 63/95 (66%), Gaps = 5/95 (5%)

Query: 14  PFTAAQWQELERQTMIYKYMMASVPIPPELLIPITKTQSNPPSSQ---SHALK-GSLELG 69
           PFT  QW+ELE Q +IYKYM++ VP+PPEL+  I ++      S+     +L  G  ++G
Sbjct: 16  PFTPTQWEELEHQALIYKYMVSGVPVPPELIFSIRRSLDTSLVSRLLPHQSLGWGCYQMG 75

Query: 70  ISGCNSDPEPWRCKRTDGKKWRCSRDVAPDQKYCE 104
             G   DPEP RC+RTDGKKWRCSR+  PD KYCE
Sbjct: 76  F-GRKPDPEPGRCRRTDGKKWRCSREAYPDSKYCE 109


>AT3G52910.1 | Symbols: AtGRF4 | AtGRF4 (GROWTH-REGULATING FACTOR
           4); transcription activator | chr3:19616177-19618268
           REVERSE
          Length = 380

 Score = 95.1 bits (235), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 48/97 (49%), Positives = 58/97 (59%), Gaps = 7/97 (7%)

Query: 15  FTAAQWQELERQTMIYKYMMASVPIPPELLIPITKT--QSNPPSSQSHALKGSL-----E 67
           F+ AQWQELE Q +IY+YM+A   +P ELL+PI K+    +P     H L+ S       
Sbjct: 83  FSWAQWQELELQALIYRYMLAGASVPQELLLPIKKSLLHQSPMHFLHHPLQHSFPHHQPS 142

Query: 68  LGISGCNSDPEPWRCKRTDGKKWRCSRDVAPDQKYCE 104
                   DPEP RCKRTDGKKWRCSRDV    KYC+
Sbjct: 143 WYWGRGAMDPEPGRCKRTDGKKWRCSRDVVAGHKYCD 179


>AT2G36400.1 | Symbols: AtGRF3 | AtGRF3 (GROWTH-REGULATING FACTOR
           3); transcription activator | chr2:15270300-15272617
           REVERSE
          Length = 398

 Score = 94.4 bits (233), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 49/98 (50%), Positives = 61/98 (62%), Gaps = 10/98 (10%)

Query: 15  FTAAQWQELERQTMIYKYMMASVPIPPELLIPITKT--QSNPPSSQSHALKG------SL 66
           F+ AQWQELE Q +IY+YM+A   +P ELL+PI K+    +P     H L+       + 
Sbjct: 77  FSWAQWQELELQALIYRYMLAGAAVPQELLLPIKKSLLHLSPSYFLHHPLQHLPHYQPAW 136

Query: 67  ELGISGCNSDPEPWRCKRTDGKKWRCSRDVAPDQKYCE 104
            LG +    DPEP RC+RTDGKKWRCSRDV    KYCE
Sbjct: 137 YLGRAAM--DPEPGRCRRTDGKKWRCSRDVFAGHKYCE 172


>AT2G06200.1 | Symbols: AtGRF6 | AtGRF6 (GROWTH-REGULATING FACTOR
           6); transcription activator | chr2:2426340-2427255
           FORWARD
          Length = 244

 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 45/109 (41%), Positives = 63/109 (57%), Gaps = 14/109 (12%)

Query: 9   MNVAVPFTAAQWQELERQTMIYKYMMASVPIPPELLIPITK-------------TQSNPP 55
           M   +PFT +QW+ELE Q +++KY+ A++P+PP LL  I +             +    P
Sbjct: 1   MATRIPFTESQWEELENQALVFKYLAANMPVPPHLLFLIKRPFLFSSSSSSSSSSSFFSP 60

Query: 56  SSQSHALKGSLELGISGCNSDPEPWRCKRTDGKKWRCSRDVAPDQKYCE 104
           +   H      E+G+ G   D EP RC+RTDGKKWRCS++  PD KYCE
Sbjct: 61  TLSPHFGWNVYEMGM-GRKIDAEPGRCRRTDGKKWRCSKEAYPDSKYCE 108


>AT5G53660.1 | Symbols: AtGRF7 | AtGRF7 (GROWTH-REGULATING FACTOR
           7); transcription activator | chr5:21794636-21795929
           FORWARD
          Length = 365

 Score = 91.3 bits (225), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 47/96 (48%), Positives = 60/96 (62%), Gaps = 24/96 (25%)

Query: 14  PFTAAQWQELERQTMIYKYMMASVPIPPELLIPITKTQSNPPSSQSHALKGSLELGISGC 73
           PFT AQ +ELERQ MIYKYM+AS+P+P +LL+      S+P S+             S C
Sbjct: 59  PFTNAQLKELERQAMIYKYMIASIPVPFDLLV------SSPSSA-------------SPC 99

Query: 74  N-----SDPEPWRCKRTDGKKWRCSRDVAPDQKYCE 104
           N      D EP RC+RTDGKKWRC+++V  + KYCE
Sbjct: 100 NNKNIAGDLEPGRCRRTDGKKWRCAKEVVSNHKYCE 135


>AT2G45480.1 | Symbols: AtGRF9 | AtGRF9 (GROWTH-REGULATING FACTOR
           9); transcription activator | chr2:18745583-18747403
           FORWARD
          Length = 429

 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 54/91 (59%), Gaps = 3/91 (3%)

Query: 17  AAQWQELERQTMIYKYMMASVPIPPELLIPITKTQSNPPSSQSHALKGSL--ELGISGCN 74
           AAQ  E   Q ++Y+Y+ A + +P  L++PI  + +   SS  +    SL    G++  +
Sbjct: 25  AAQLMEFRMQALVYRYIEAGLRVPHHLVVPIWNSLALSSSSNYNYHSSSLLSNKGVTHID 84

Query: 75  S-DPEPWRCKRTDGKKWRCSRDVAPDQKYCE 104
           + + EP RC+RTDGKKWRCS  V   +KYCE
Sbjct: 85  TLETEPTRCRRTDGKKWRCSNTVLLFEKYCE 115



 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 40/87 (45%), Gaps = 19/87 (21%)

Query: 70  ISGCNSDPEPWRCKRTDGKKWRCSRDVAPDQKYCEXXXXXXXXXXXXXVELHTDSMAQLL 129
           + G  +D EP RC+RTDGKKWRCS+DV   QKYC                   D      
Sbjct: 299 LQGVETDNEPGRCRRTDGKKWRCSKDVLSGQKYC-------------------DKHMHRG 339

Query: 130 NQKSHFPNQTNSHNLSIFRSPTVSAAA 156
            +K H  + TNSH  + F   TV  A 
Sbjct: 340 MKKKHPVDTTNSHENAGFSPLTVETAV 366