Jatropha Genome Database

JcCB0735811.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0735811.10 + phase: 0 
         (127 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G14910.2 | Symbols:  | imidazoleglycerol-phosphate dehydratas...    89   8e-19
AT4G14910.1 | Symbols:  | imidazoleglycerol-phosphate dehydratas...    89   8e-19
AT3G22425.2 | Symbols: IGPD | IGPD; imidazoleglycerol-phosphate ...    83   4e-17
AT3G22425.1 | Symbols: IGPD, HISN5A | IGPD; imidazoleglycerol-ph...    83   5e-17

>AT4G14910.2 | Symbols:  | imidazoleglycerol-phosphate dehydratase,
           putative | chr4:8528507-8530105 REVERSE
          Length = 308

 Score = 89.0 bits (219), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 61/110 (55%), Positives = 70/110 (63%), Gaps = 19/110 (17%)

Query: 26  ISPRNLLPTRIHYPIFSSTP-----IQMDSQSTLRASSS------QDNG--STVTSSPIE 72
           +S R LLP R    I SS P     + M+SQS  R S S       DNG  +  T+SPIE
Sbjct: 16  LSSRALLPPRT--SIASSHPPPPRFLVMNSQSQHRPSISCASPPPGDNGFPAITTASPIE 73

Query: 73  SVGREGRIGEVKRVTRETNVSVNINLDGTGIADSSTGIPFLDHMLDVVLS 122
           S     RIGEVKR T+ETNVSV INLDG G++DSSTGIPFLDHMLD + S
Sbjct: 74  S----ARIGEVKRETKETNVSVKINLDGHGVSDSSTGIPFLDHMLDQLAS 119


>AT4G14910.1 | Symbols:  | imidazoleglycerol-phosphate dehydratase,
           putative | chr4:8528451-8530105 REVERSE
          Length = 272

 Score = 88.6 bits (218), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 61/110 (55%), Positives = 70/110 (63%), Gaps = 19/110 (17%)

Query: 26  ISPRNLLPTRIHYPIFSSTP-----IQMDSQSTLRASSS------QDNG--STVTSSPIE 72
           +S R LLP R    I SS P     + M+SQS  R S S       DNG  +  T+SPIE
Sbjct: 16  LSSRALLPPRT--SIASSHPPPPRFLVMNSQSQHRPSISCASPPPGDNGFPAITTASPIE 73

Query: 73  SVGREGRIGEVKRVTRETNVSVNINLDGTGIADSSTGIPFLDHMLDVVLS 122
           S     RIGEVKR T+ETNVSV INLDG G++DSSTGIPFLDHMLD + S
Sbjct: 74  SA----RIGEVKRETKETNVSVKINLDGHGVSDSSTGIPFLDHMLDQLAS 119


>AT3G22425.2 | Symbols: IGPD | IGPD; imidazoleglycerol-phosphate
           dehydratase | chr3:7951110-7952853 FORWARD
          Length = 270

 Score = 83.2 bits (204), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 50/83 (60%), Positives = 60/83 (72%), Gaps = 9/83 (10%)

Query: 42  SSTP--IQMDSQSTLRASSSQDNGSTVTSSPIESVGREGRIGEVKRVTRETNVSVNINLD 99
           SS P  ++M+SQS LR S S    S+ + +        GRIGEVKRVT+ETNVSV INLD
Sbjct: 42  SSLPRFLRMESQSQLRQSISCSASSSSSMAL-------GRIGEVKRVTKETNVSVKINLD 94

Query: 100 GTGIADSSTGIPFLDHMLDVVLS 122
           GTG+ADSS+GIPFLDHMLD + S
Sbjct: 95  GTGVADSSSGIPFLDHMLDQLAS 117


>AT3G22425.1 | Symbols: IGPD, HISN5A | IGPD;
           imidazoleglycerol-phosphate dehydratase |
           chr3:7951110-7952537 FORWARD
          Length = 264

 Score = 82.8 bits (203), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 50/83 (60%), Positives = 60/83 (72%), Gaps = 9/83 (10%)

Query: 42  SSTP--IQMDSQSTLRASSSQDNGSTVTSSPIESVGREGRIGEVKRVTRETNVSVNINLD 99
           SS P  ++M+SQS LR S S    S+ + +        GRIGEVKRVT+ETNVSV INLD
Sbjct: 42  SSLPRFLRMESQSQLRQSISCSASSSSSMA-------LGRIGEVKRVTKETNVSVKINLD 94

Query: 100 GTGIADSSTGIPFLDHMLDVVLS 122
           GTG+ADSS+GIPFLDHMLD + S
Sbjct: 95  GTGVADSSSGIPFLDHMLDQLAS 117