Jatropha Genome Database

JcCB0735771.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0735771.10 + phase: 2 /TE/pseudo/partial
         (207 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G67100.1 | Symbols: ICU2 | ICU2 (INCURVATA2); DNA-directed DN...   293   7e-80

>AT5G67100.1 | Symbols: ICU2 | ICU2 (INCURVATA2); DNA-directed DNA
           polymerase | chr5:26776994-26785104 FORWARD
          Length = 1492

 Score =  293 bits (749), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 141/189 (74%), Positives = 167/189 (88%), Gaps = 1/189 (0%)

Query: 2   PMLASEWKKPGMLSHFTVVRKLEGGIFPMGFSKEVTERNTNAGSNVLAIESSERALLNRL 61
           PM A E K+ G+LSHFTVVR  EG  +P+G+ KEV++RN+  G NVL+IE+SERALLNRL
Sbjct: 597 PMPAPERKRSGILSHFTVVRNPEGTGYPIGWKKEVSDRNSKNGCNVLSIENSERALLNRL 656

Query: 62  MIALSKLDSDVLVGHNISGFDLDVLLHRAQACRVPSSMWSKIGRLKRSAMPKLTKGNSIF 121
            + L+KLDSD+LVGHNISGFDLDVLL RAQAC+V SSMWSKIGRLKRS MPKL KGNS +
Sbjct: 657 FLELNKLDSDILVGHNISGFDLDVLLQRAQACKVQSSMWSKIGRLKRSFMPKL-KGNSNY 715

Query: 122 GSGASPGIMSCIAGRLLCDTYLCSRDLLKEVSYSLTQLARTRLNKDRKEIAPHDIPGMFQ 181
           GSGA+PG+MSCIAGRLLCDT LCSRDLLKEVSYSLT L++T+LN+DRKEIAP+DIP MFQ
Sbjct: 716 GSGATPGLMSCIAGRLLCDTDLCSRDLLKEVSYSLTDLSKTQLNRDRKEIAPNDIPKMFQ 775

Query: 182 TSKSLIELV 190
           +SK+L+EL+
Sbjct: 776 SSKTLVELI 784