Jatropha Genome Database

JcCB0733251.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0733251.10 + phase: 0 /pseudo/partial
         (164 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G01460.1 | Symbols: MBD9, ATMBD9 | MBD9; DNA binding / methyl...    47   5e-06

>AT3G01460.1 | Symbols: MBD9, ATMBD9 | MBD9; DNA binding / methyl-CpG
            binding | chr3:173316-182038 FORWARD
          Length = 2176

 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 12/77 (15%)

Query: 85   DDTACQACGSRDRGDVMLICGDESGSIGCGIGMHMDCFDPPLENIPEEDWFCPNCXXXXX 144
            D+  C+ CG     D +L+C        C    H  C +PPL  IP+ +W+CP+C     
Sbjct: 1286 DEGVCKVCGVDKDDDSVLLCD------TCDAEYHTYCLNPPLIRIPDGNWYCPSCVIAKR 1339

Query: 145  XXXXA------KRRRKG 155
                A       RRRKG
Sbjct: 1340 MAQEALESYKLVRRRKG 1356