Jatropha Genome Database

JcCB0713651.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0713651.10 - phase: 0 /TE/partial
         (944 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G09510.1 | Symbols:  | nucleic acid binding | chr3:2921804-29...   105   2e-22
AT4G29090.1 | Symbols:  | reverse transcriptase, putative / RNA-...   102   2e-21
ATMG01250.1 | Symbols: ORF102 | hypothetical protein | chrM:3105...    86   9e-17
AT1G43760.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...    69   1e-11
AT4G20520.1 | Symbols:  | RNA binding / RNA-directed DNA polymer...    67   5e-11
AT2G02650.1 | Symbols:  | reverse transcriptase-related | chr2:7...    59   1e-08
AT3G26855.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...    52   3e-06

>AT3G09510.1 | Symbols:  | nucleic acid binding |
           chr3:2921804-2923258 FORWARD
          Length = 484

 Score =  105 bits (261), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 108/223 (48%), Gaps = 24/223 (10%)

Query: 689 LDAPLGRRPSYAWRSIHAAIGVLKQGVRWRVGNGETIG------VLSHPWMPRDHSFWVE 742
           LDA + ++ SY W S+   I +LK+G R  +G+G+ I       V SHP  P +     E
Sbjct: 12  LDAKVRKQQSYGWASLLDGIALLKKGTRHLIGDGQNIRIGLDNIVDSHPPRPLN----TE 67

Query: 743 DSRDFVDPNMKVRELFVEGEGR---WDVGKVMTLFSLREFRAILGIPISINANRDQIMWH 799
           ++       M +  LF E +G    WD  K+       +   I  I ++ +   D+I+W+
Sbjct: 68  ETYK----EMTINNLF-ERKGSYYFWDDSKISQFVDQSDHGFIHRIYLAKSKKPDKIIWN 122

Query: 800 WDKKGIYSVRSGYYVARRLLRGRVHEIDGGWWG-----KMWCLDASPKDKDFMWRALRNV 854
           ++  G Y+VRSGY++        +  I+          ++W L   PK K F+WRAL   
Sbjct: 123 YNTTGEYTVRSGYWLLTHDPSTNIPAINPPHGSIDLKTRIWNLPIMPKLKHFLWRALSQA 182

Query: 855 LPTKERLRRRGVEVDIGCPWCG-EEEDINHAIVLCSKAKGVWR 896
           L T ERL  RG+ +D  CP C  E E INHA+  C  A   WR
Sbjct: 183 LATTERLTTRGMRIDPSCPRCHRENESINHALFTCPFATMAWR 225


>AT4G29090.1 | Symbols:  | reverse transcriptase, putative /
           RNA-dependent DNA polymerase, putative |
           chr4:14333528-14335255 FORWARD
          Length = 575

 Score =  102 bits (253), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/235 (31%), Positives = 112/235 (47%), Gaps = 18/235 (7%)

Query: 677 TFQSQIFP**DFLDAPLGRRPSYAWRSIHAAIGVLKQGVRWRVGNGETIGVLSHPWM--- 733
            F+S+ F   D L+APLG RPS+ W+SIHA+  +L+QG R  VGNGE I +  H W+   
Sbjct: 87  VFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEILRQGARAVVGNGEDIIIWRHKWLDSK 146

Query: 734 PRDHSFWVE----DSRDFVDPNMKVRELFVEGEGRWDVGKVMTLFSLREFRAILGIPISI 789
           P   +  ++         V   +KV +L  E    W    +  LF   E + I  +    
Sbjct: 147 PASAALRMQRVPPQEYASVSSILKVSDLIDESGREWRKDVIEMLFPEVERKLIGELRPGG 206

Query: 790 NANRDQIMWHWDKKGIYSVRSGYYVARRLL--RGRVHEID----GGWWGKMWCLDASPKD 843
               D   W +   G Y+V+SGY+V  +++  R    E+        + K+W    SPK 
Sbjct: 207 RRILDSYTWDYTSSGDYTVKSGYWVLTQIINKRSSPQEVSEPSLNPIYQKIWKSQTSPKI 266

Query: 844 KDFMWRALRNVLPTKERLRRRGVEVD---IGCPWCGEEEDINHAIVLCSKAKGVW 895
           + F+W+ L N LP    L  R +  +   I CP C  +E +NH +  C+ A+  W
Sbjct: 267 QHFLWKCLSNSLPVAGALAYRHLSKESACIRCPSC--KETVNHLLFKCTFARLTW 319


>ATMG01250.1 | Symbols: ORF102 | hypothetical protein |
           chrM:310514-310882 FORWARD
          Length = 122

 Score = 86.3 bits (212), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 38/68 (55%), Positives = 49/68 (72%)

Query: 411 LLNGKEVGPIRPGRGLRQGDPLSPYLFLFCAKGLSLLFQDAKRRGRLQGMKVGRNCPSIT 470
           ++NG   G + P RGLRQGDPLSPYLF+ C + LS L + A+ +GRL G++V  N P I 
Sbjct: 13  IINGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRVSNNSPRIN 72

Query: 471 HLLFADDS 478
           HLLFADD+
Sbjct: 73  HLLFADDT 80


>AT1G43760.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           cellular_component unknown; CONTAINS InterPro DOMAIN/s:
           RNA-directed DNA polymerase (reverse transcriptase),
           related (InterPro:IPR015706),
           Endonuclease/exonuclease/phosphatase
           (InterPro:IPR005135); BEST Arabidopsis thaliana protein
           match is: unknown protein (TAIR:AT1G40390.1); Has 2614
           Blast hits to 2551 proteins in 44 species: Archae - 0;
           Bacteria - 0; Metazoa - 1517; Fungi - 2; Plants - 1086;
           Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
           | chr1:16528880-16531065 REVERSE
          Length = 626

 Score = 69.3 bits (168), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 77/331 (23%), Positives = 133/331 (40%), Gaps = 37/331 (11%)

Query: 2   WSSMYVNALAKIITAPVSDHAPLFIQLNY--QQVDNNYRRFRFDNS-----------WVG 48
           W S + +A+A    + VSDH+P  I L    ++    +R F F ++           W  
Sbjct: 295 WFSSFPSAIAVFELSGVSDHSPCIIILENLPKRSKKCFRYFSFLSTHPTFLVSLTVAWEE 354

Query: 49  ERELDQLVKDVWCNNDSGTLLHKRDVCIKEMEKWGRQFNKIFWKKKRIL-------KQRI 101
           +  +   +  +      G  L     C K + + G  F  I  K K  L        Q +
Sbjct: 355 QIPVGSHMFSL------GEHLKAAKKCCKLLNRQG--FGNIQHKTKEALDSLESIQSQLL 406

Query: 102 ANARDVFDDVTVQRLKNEWNTILFKEECRMRQIRKQRWLYWGDQNSKYFHASIKNRKRRA 161
            N  D    V     + +WN      E   RQ  + +WL  GD N+++FH  I   + + 
Sbjct: 407 TNPSDSLFRVE-HVARKKWNFFAAALESFYRQKSRIKWLQDGDANTRFFHKVILANQAKN 465

Query: 162 KILKLENEDGDIVQDNDSLEQITLNYFSTVYSAEE*V----GIEIFNLVQP-KVTAIQNN 216
            I  L  +D   V++   ++++ + Y++ +  ++  +     ++    + P +      +
Sbjct: 466 LIKFLRMDDDVRVENVTQVKEMIVAYYTHLLGSDSDILTPDSVQRIKDIHPFRCNDTLAS 525

Query: 217 ILTAPFTLDEIREAAFDMQPDKSPGPDGLNPAFFQNFWHVIGDDIWRDSKQWLDTGTFPK 276
            L+A  +  EI  A F M  +K+PGPD     FF   W V+ D      K++  TG   K
Sbjct: 526 RLSALPSDKEITAAVFAMPRNKAPGPDSFTAEFFWESWFVVKDSTIAAVKEFFRTGHLLK 585

Query: 277 TLTDIHIVLLPKCDILCR*KSIDLFRFVMFC 307
                 I L+PK   +     + +FR V  C
Sbjct: 586 RFNATAITLIPKVTGV---DQLSMFRPVSCC 613


>AT4G20520.1 | Symbols:  | RNA binding / RNA-directed DNA polymerase
           | chr4:11045912-11047716 FORWARD
          Length = 376

 Score = 67.0 bits (162), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 48/77 (62%)

Query: 320 KKILPLIIDECQCAFVPGRLISDNVAVAFELIHNIKSRKNQGGACALKIDISKAYDRVNW 379
           K ++  +I   Q +F+PGR+ +DN+    E +H+++ +K   G   LK+D+ KAYDR+ W
Sbjct: 6   KPLMTNLIGPAQASFIPGRVSTDNIVFVQEAVHSMRRKKGVKGWMLLKLDLEKAYDRIRW 65

Query: 380 EFLRGMMLRMGFYEKWV 396
           ++L   ++  GF E W+
Sbjct: 66  DYLEDTLISAGFPEVWL 82


>AT2G02650.1 | Symbols:  | reverse transcriptase-related |
           chr2:735411-736546 FORWARD
          Length = 365

 Score = 59.3 bits (142), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 50/103 (48%), Gaps = 6/103 (5%)

Query: 808 VRSGYYVARR---LLRGRVHEIDGGWWGK--MWCLDASPKDKDFMWRALRNVLPTKERLR 862
           +RSGY+VA     L    +    G    K  +W L  +PK K F+WR +   L T  RLR
Sbjct: 6   LRSGYWVATHEDLLEEEAIQPPPGSTEVKQAIWKLHVAPKIKHFLWRCVTGALATNTRLR 65

Query: 863 RRGVEVDIGCPWCG-EEEDINHAIVLCSKAKGVWRQGGYEVGD 904
            R ++ D  C  C  EEE I+H +  C   + VWR     +G+
Sbjct: 66  SRNIDADPICQRCCIEEETIHHIMFNCPYTQSVWRSANIIIGN 108


>AT3G26855.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           cellular_component unknown; CONTAINS InterPro DOMAIN/s:
           RNA-directed DNA polymerase (reverse transcriptase),
           related (InterPro:IPR015706); BEST Arabidopsis thaliana
           protein match is: reverse transcriptase-related
           (TAIR:AT2G02650.1); Has 97 Blast hits to 97 proteins in
           6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
           - 0; Plants - 97; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr3:9898680-9899350 REVERSE
          Length = 163

 Score = 51.6 bits (122), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 33/63 (52%)

Query: 830 WWGKMWCLDASPKDKDFMWRALRNVLPTKERLRRRGVEVDIGCPWCGEEEDINHAIVLCS 889
           W G +W L  SPK K  +W+AL N LP   +L  R + ++  C  C + E I H +  C 
Sbjct: 5   WIGDIWSLKISPKIKLLIWKALNNALPVGAQLLSRNISIEPFCTRCRDFETITHILFNCP 64

Query: 890 KAK 892
            A+
Sbjct: 65  FAQ 67