Jatropha Genome Database

JcCB0704851.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0704851.10 + phase: 0 
         (78 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G21190.1 | Symbols:  | ER lumen protein retaining receptor fa...   129   5e-31
AT1G75760.1 | Symbols:  | ER lumen protein retaining receptor fa...   127   1e-30
AT4G38790.1 | Symbols:  | ER lumen protein retaining receptor fa...   124   2e-29
AT1G19970.1 | Symbols:  | ER lumen protein retaining receptor fa...   120   2e-28
AT3G25160.1 | Symbols:  | ER lumen protein retaining receptor fa...    68   1e-12

>AT2G21190.1 | Symbols:  | ER lumen protein retaining receptor
          family protein | chr2:9080916-9082642 FORWARD
          Length = 269

 Score =  129 bits (323), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 57/71 (80%), Positives = 67/71 (94%)

Query: 5  KRPIHAVATWIRRQPPKIKTFLAVVSGIVALVFLRMVVHDHDNLFVASEAVHAVGISVLI 64
          K PIHAV+TW+RRQPPK+K FLAVVSG+ ALV L+++VHDHDNLFVA+EAVH++GISVLI
Sbjct: 2  KTPIHAVSTWVRRQPPKVKAFLAVVSGMAALVLLKLIVHDHDNLFVAAEAVHSIGISVLI 61

Query: 65 YKLMKEKTCAG 75
          YKLMKEKTCAG
Sbjct: 62 YKLMKEKTCAG 72


>AT1G75760.1 | Symbols:  | ER lumen protein retaining receptor
          family protein | chr1:28446940-28448421 REVERSE
          Length = 272

 Score =  127 bits (319), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 57/75 (76%), Positives = 67/75 (89%)

Query: 1  MKASKRPIHAVATWIRRQPPKIKTFLAVVSGIVALVFLRMVVHDHDNLFVASEAVHAVGI 60
          MKA+ RPIHAV TW+RRQPPK+K FL VVS + ALV LR++VHDHDNLFVA+EAVH++GI
Sbjct: 1  MKAATRPIHAVTTWVRRQPPKVKGFLGVVSAMTALVLLRVIVHDHDNLFVAAEAVHSLGI 60

Query: 61 SVLIYKLMKEKTCAG 75
          SVLIYKL KE+TCAG
Sbjct: 61 SVLIYKLTKERTCAG 75


>AT4G38790.1 | Symbols:  | ER lumen protein retaining receptor
          family protein | chr4:18111426-18112977 FORWARD
          Length = 273

 Score =  124 bits (310), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 57/76 (75%), Positives = 67/76 (88%), Gaps = 1/76 (1%)

Query: 1  MKAS-KRPIHAVATWIRRQPPKIKTFLAVVSGIVALVFLRMVVHDHDNLFVASEAVHAVG 59
          MKA+ K PIH V +W+RRQPPK+K FLAVV+G+ ALV LR +VHDHDNLFVA+EAVH++G
Sbjct: 1  MKATTKTPIHVVWSWVRRQPPKVKAFLAVVTGMAALVLLRFIVHDHDNLFVAAEAVHSIG 60

Query: 60 ISVLIYKLMKEKTCAG 75
          I VLIYKLMKEKTCAG
Sbjct: 61 ICVLIYKLMKEKTCAG 76


>AT1G19970.1 | Symbols:  | ER lumen protein retaining receptor
          family protein | chr1:6931194-6932597 REVERSE
          Length = 272

 Score =  120 bits (300), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 55/75 (73%), Positives = 63/75 (84%)

Query: 1  MKASKRPIHAVATWIRRQPPKIKTFLAVVSGIVALVFLRMVVHDHDNLFVASEAVHAVGI 60
          MKA K PI +V  WIRRQPPK+K FL VV+ +  LV LR++VH+HDNLFVASEAVHAVGI
Sbjct: 1  MKAEKNPIQSVMAWIRRQPPKVKAFLGVVTAMTVLVLLRVIVHEHDNLFVASEAVHAVGI 60

Query: 61 SVLIYKLMKEKTCAG 75
          +VLIYKL KEKTCAG
Sbjct: 61 AVLIYKLTKEKTCAG 75


>AT3G25160.1 | Symbols:  | ER lumen protein retaining receptor
          family protein | chr3:9160337-9162023 REVERSE
          Length = 272

 Score = 67.8 bits (164), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/68 (41%), Positives = 48/68 (70%)

Query: 8  IHAVATWIRRQPPKIKTFLAVVSGIVALVFLRMVVHDHDNLFVASEAVHAVGISVLIYKL 67
          ++ V  W+R+Q  K+K  L ++  ++ +V L+  V +H++ F+ASE +HA GI +LIYKL
Sbjct: 10 VNVVFGWLRQQSNKVKIALGIIISLILVVLLKFTVRNHNHFFIASELIHAAGILILIYKL 69

Query: 68 MKEKTCAG 75
           ++KTC+G
Sbjct: 70 TRQKTCSG 77