Jatropha Genome Database

JcCB0701471.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0701471.10 + phase: 0 /partial/short
         (30 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G47160.1 | Symbols:  | protein binding / zinc ion binding | c...    62   8e-11
AT5G01520.1 | Symbols:  | zinc finger (C3HC4-type RING finger) f...    60   3e-10
AT5G01520.2 | Symbols:  | zinc finger (C3HC4-type RING finger) f...    60   3e-10
AT5G58787.2 | Symbols:  | zinc finger (C3HC4-type RING finger) f...    59   8e-10
AT5G58787.1 | Symbols:  | zinc finger (C3HC4-type RING finger) f...    59   8e-10

>AT3G47160.1 | Symbols:  | protein binding / zinc ion binding |
          chr3:17360238-17361879 REVERSE
          Length = 245

 Score = 62.0 bits (149), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 25/29 (86%), Positives = 26/29 (89%)

Query: 1  MRLSYSPAAQFFLFLVQWTDCHLAGALGF 29
          MRLSY+PAAQF LFLVQWTDCHLAG LG 
Sbjct: 38 MRLSYTPAAQFLLFLVQWTDCHLAGTLGL 66


>AT5G01520.1 | Symbols:  | zinc finger (C3HC4-type RING finger)
          family protein | chr5:206797-208399 FORWARD
          Length = 242

 Score = 60.1 bits (144), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 24/29 (82%), Positives = 25/29 (86%)

Query: 1  MRLSYSPAAQFFLFLVQWTDCHLAGALGF 29
          MRLSYSPAA  FLFL+QWTDCH AGALG 
Sbjct: 37 MRLSYSPAAHLFLFLLQWTDCHFAGALGL 65


>AT5G01520.2 | Symbols:  | zinc finger (C3HC4-type RING finger)
          family protein | chr5:206797-208170 FORWARD
          Length = 172

 Score = 60.1 bits (144), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 24/29 (82%), Positives = 25/29 (86%)

Query: 1  MRLSYSPAAQFFLFLVQWTDCHLAGALGF 29
          MRLSYSPAA  FLFL+QWTDCH AGALG 
Sbjct: 37 MRLSYSPAAHLFLFLLQWTDCHFAGALGL 65


>AT5G58787.2 | Symbols:  | zinc finger (C3HC4-type RING finger)
          family protein | chr5:23742733-23744324 FORWARD
          Length = 227

 Score = 58.5 bits (140), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 25/29 (86%), Positives = 25/29 (86%)

Query: 1  MRLSYSPAAQFFLFLVQWTDCHLAGALGF 29
          MRLSYSP AQFFLFLVQWTDC LAG LG 
Sbjct: 38 MRLSYSPTAQFFLFLVQWTDCKLAGFLGL 66


>AT5G58787.1 | Symbols:  | zinc finger (C3HC4-type RING finger)
          family protein | chr5:23742733-23744324 FORWARD
          Length = 242

 Score = 58.5 bits (140), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 25/29 (86%), Positives = 25/29 (86%)

Query: 1  MRLSYSPAAQFFLFLVQWTDCHLAGALGF 29
          MRLSYSP AQFFLFLVQWTDC LAG LG 
Sbjct: 38 MRLSYSPTAQFFLFLVQWTDCKLAGFLGL 66