Jatropha Genome Database

JcCB0700881.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0700881.10 + phase: 2 /partial
         (139 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G27600.2 | Symbols:  | glycosyl transferase family 43 protein...   248   9e-67
AT1G27600.1 | Symbols:  | glycosyl transferase family 43 protein...   248   9e-67
AT2G37090.1 | Symbols: IRX9 | IRX9 (IRREGULAR XYLEM 9); transfer...    93   5e-20
AT5G67230.1 | Symbols:  | glycosyl transferase family 43 protein...    54   3e-08

>AT1G27600.2 | Symbols:  | glycosyl transferase family 43 protein |
           chr1:9604083-9605881 REVERSE
          Length = 394

 Score =  248 bits (633), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 113/139 (81%), Positives = 122/139 (87%)

Query: 1   RFGAWPVAMLAQSKNKAILEGPVCNGSHVIGWHTNEKSKRLRRFHVDMSGFAFNSTILWD 60
           RFG WPVAMLAQSKNKAILEGPVCNGS VIGWHTNEKSKRLRRFHVDMSGFAFNSTILWD
Sbjct: 256 RFGTWPVAMLAQSKNKAILEGPVCNGSQVIGWHTNEKSKRLRRFHVDMSGFAFNSTILWD 315

Query: 61  PKRWRRPFSSAIRQLDTVKEGFQETTFIEQVIEDESQIESVPPGCSRILNWHLHLDAHHL 120
           PKRWRRPFS   RQLDTVKEGFQET+FIEQV+ DES++E VPP CS ILNWHLHLDA  +
Sbjct: 316 PKRWRRPFSHPTRQLDTVKEGFQETSFIEQVVADESEMEGVPPACSSILNWHLHLDALDV 375

Query: 121 VYPRGWLFQKNLDVILPIK 139
            YP+GW  QKNL  ++ +K
Sbjct: 376 PYPQGWAIQKNLQALITMK 394


>AT1G27600.1 | Symbols:  | glycosyl transferase family 43 protein |
           chr1:9604083-9605881 REVERSE
          Length = 394

 Score =  248 bits (633), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 113/139 (81%), Positives = 122/139 (87%)

Query: 1   RFGAWPVAMLAQSKNKAILEGPVCNGSHVIGWHTNEKSKRLRRFHVDMSGFAFNSTILWD 60
           RFG WPVAMLAQSKNKAILEGPVCNGS VIGWHTNEKSKRLRRFHVDMSGFAFNSTILWD
Sbjct: 256 RFGTWPVAMLAQSKNKAILEGPVCNGSQVIGWHTNEKSKRLRRFHVDMSGFAFNSTILWD 315

Query: 61  PKRWRRPFSSAIRQLDTVKEGFQETTFIEQVIEDESQIESVPPGCSRILNWHLHLDAHHL 120
           PKRWRRPFS   RQLDTVKEGFQET+FIEQV+ DES++E VPP CS ILNWHLHLDA  +
Sbjct: 316 PKRWRRPFSHPTRQLDTVKEGFQETSFIEQVVADESEMEGVPPACSSILNWHLHLDALDV 375

Query: 121 VYPRGWLFQKNLDVILPIK 139
            YP+GW  QKNL  ++ +K
Sbjct: 376 PYPQGWAIQKNLQALITMK 394


>AT2G37090.1 | Symbols: IRX9 | IRX9 (IRREGULAR XYLEM 9);
           transferase, transferring glycosyl groups /
           xylosyltransferase | chr2:15587671-15589223 REVERSE
          Length = 351

 Score = 93.2 bits (230), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 46/117 (39%), Positives = 76/117 (64%), Gaps = 14/117 (11%)

Query: 2   FGAWPVAMLAQSKNKAILEGPVCNGSHVIGWH---TNEKSKRLRRFHVDMSGFAFNSTIL 58
           FG WP+A+L+ ++ + ++EGPVC  S V+GWH    N +++     H+  S FAFNS+IL
Sbjct: 234 FGTWPMALLSANRKRVVVEGPVCESSQVLGWHLRKINNETETKPPIHI--SSFAFNSSIL 291

Query: 59  WDPKRWRRPFSSAIRQLDTVKEGFQETTFIEQVI-EDESQIESVPP-GCSRILNWHL 113
           WDP+RW RP S    + D++K       +++QV+ ED+++++ +P   CS+I+ W L
Sbjct: 292 WDPERWGRPSSVEGTKQDSIK-------YVKQVVLEDDTKLKGLPAQDCSKIMLWRL 341


>AT5G67230.1 | Symbols:  | glycosyl transferase family 43 protein |
           chr5:26822506-26824181 FORWARD
          Length = 492

 Score = 54.3 bits (129), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 77/172 (44%), Gaps = 36/172 (20%)

Query: 2   FGAWPVAMLA---------------QSKNK----AILEGPVCNGSH-VIGWH---TNEKS 38
           FGA  V +LA               Q KNK      ++GP CN S  ++GWH   T   +
Sbjct: 272 FGALSVGILAHSGNADELSSILKNEQGKNKEKPSMPIQGPSCNSSEKLVGWHIFNTQPYA 331

Query: 39  KRLRRF----------HVDMSGFAFNSTILWDPKRWRRPFSSAIRQLDTVKEGFQETTFI 88
           K+   +           ++ SGF  NS +LW      +P  + ++ L  + +G+ E    
Sbjct: 332 KKTAVYIDEKAPVMPSKMEWSGFVLNSRLLWKESLDDKP--AWVKDLSLLDDGYAEIESP 389

Query: 89  EQVIEDESQIESVPPGCSRILNWHLHLDAH-HLVYPRGWLFQKNLDVILPIK 139
             +++D S +E +     R+L W L ++A     +P GW+ +  L++ +P K
Sbjct: 390 LSLVKDPSMVEPLGSCGRRVLLWWLRVEARADSKFPPGWIIKSPLEITVPSK 441