Jatropha Genome Database

JcCB0698781.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0698781.10 - phase: 1 /pseudo/partial
         (207 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G20960.1 | Symbols:  | cytidine/deoxycytidylate deaminase fam...   144   5e-35

>AT4G20960.1 | Symbols:  | cytidine/deoxycytidylate deaminase family
           protein | chr4:11212077-11213530 FORWARD
          Length = 426

 Score =  144 bits (362), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 87/170 (51%), Positives = 118/170 (69%), Gaps = 4/170 (2%)

Query: 38  LTCRYSLSVNGHLLNQLGEGATECGGYYSKLLQEYDAIIVSSSFVDMFSIPTSQEP--GA 95
           L  RYS+SVNG LL+++G+GA++ GGYYSKLLQEYDAII+SSS  D  S  +SQE    +
Sbjct: 220 LALRYSMSVNGCLLDKIGQGASDSGGYYSKLLQEYDAIILSSSLSDELSSISSQEAINVS 279

Query: 96  KQPLCVITVT-ARSSPIQIPS-LAEDTASGIVVFAEKETTIRPETAQKGVETVVLDQVSL 153
            QP+ +I  + A+ S I   S   E++   +VVF  KE+      +  GVETVVL++++L
Sbjct: 280 IQPIQIIVASNAQQSHILASSHTVEESGPKVVVFTAKESVAESGISSSGVETVVLEKINL 339

Query: 154 IEILEYCKLQGLCSVLLDLRGSLGELEGLFNDGIEHNMLQKVVVEVLPLW 203
             IL+YC  +GLCSVLLDLRG++ +LE L  DG E  +LQKV++EVLP W
Sbjct: 340 DSILDYCYNRGLCSVLLDLRGNVKDLEVLLRDGFEQKLLQKVIIEVLPEW 389