Jatropha Genome Database

JcCB0697191.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0697191.10 - phase: 1 /partial
         (132 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G50480.1 | Symbols: THFS | THFS (10-FORMYLTETRAHYDROFOLATE SY...   223   3e-59
AT2G12280.1 | Symbols:  | ligase, putative | chr2:4922324-492259...   143   3e-35
AT2G12200.1 | Symbols:  | ligase, putative | chr2:4900651-490094...    96   6e-21

>AT1G50480.1 | Symbols: THFS | THFS (10-FORMYLTETRAHYDROFOLATE
           SYNTHETASE); ATP binding / copper ion binding /
           formate-tetrahydrofolate ligase | chr1:18702064-18704687
           FORWARD
          Length = 634

 Score =  223 bits (567), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 103/132 (78%), Positives = 115/132 (87%)

Query: 1   KACENVTQPLKFLYPLXXXXXXXXXXXXRSYGAQGVEYSEQAEKQIEMYSRQGFSGLPIC 60
           KAC+N+TQPL+FLYPL            +SYGA GVEYS+QAEKQIEMY++QGFS LPIC
Sbjct: 503 KACQNITQPLRFLYPLDIGIKDKIEAIAKSYGASGVEYSDQAEKQIEMYTQQGFSNLPIC 562

Query: 61  MAKTQYSFSHNASEKGAPSGFVLPIRDVRASIGAGFIYPLVGTMSTMPGLPTRPCFYDID 120
           M+KTQYSFSH+AS+KGAPSGFVLPIRDVR SIGAGFIYPLVGTMSTMPGLPTRPCFY+ID
Sbjct: 563 MSKTQYSFSHDASKKGAPSGFVLPIRDVRGSIGAGFIYPLVGTMSTMPGLPTRPCFYEID 622

Query: 121 LDTATGKVIGLS 132
           +DT TGKV GLS
Sbjct: 623 IDTETGKVRGLS 634


>AT2G12280.1 | Symbols:  | ligase, putative | chr2:4922324-4922596
           FORWARD
          Length = 90

 Score =  143 bits (361), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 65/77 (84%), Positives = 73/77 (94%)

Query: 48  MYSRQGFSGLPICMAKTQYSFSHNASEKGAPSGFVLPIRDVRASIGAGFIYPLVGTMSTM 107
           MY++QGFS LPICM+KTQYSFSH+AS+KGAPSGFVLPIRDVR SIGAGFIYPLVGTMSTM
Sbjct: 1   MYTQQGFSNLPICMSKTQYSFSHDASKKGAPSGFVLPIRDVRGSIGAGFIYPLVGTMSTM 60

Query: 108 PGLPTRPCFYDIDLDTA 124
           PGLPTRPCFY+ID+  +
Sbjct: 61  PGLPTRPCFYEIDISQS 77


>AT2G12200.1 | Symbols:  | ligase, putative | chr2:4900651-4900944
           FORWARD
          Length = 63

 Score = 95.9 bits (237), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 44/63 (69%), Positives = 53/63 (84%)

Query: 48  MYSRQGFSGLPICMAKTQYSFSHNASEKGAPSGFVLPIRDVRASIGAGFIYPLVGTMSTM 107
           MY++QGFS LPICM+KTQYSFSH+ S+K APSGFVLPIRDVR SIGAGFIY    T++ +
Sbjct: 1   MYTQQGFSNLPICMSKTQYSFSHDTSKKRAPSGFVLPIRDVRGSIGAGFIYTTKKTVNPL 60

Query: 108 PGL 110
            G+
Sbjct: 61  AGM 63