Jatropha Genome Database

JcCB0696171.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0696171.10 + phase: 0 /pseudo/partial
         (83 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G19770.1 | Symbols: ATVPS9A, VPS9A | VPS9A; Rho guanyl-nucleo...    99   7e-22
AT3G19770.2 | Symbols: ATVPS9A, VPS9A | VPS9A; Rho guanyl-nucleo...    97   3e-21
AT5G09320.1 | Symbols: VPS9B | VPS9B | chr5:2889007-2892016 REVERSE    89   8e-19

>AT3G19770.1 | Symbols: ATVPS9A, VPS9A | VPS9A; Rho
           guanyl-nucleotide exchange factor | chr3:6866916-6869114
           FORWARD
          Length = 520

 Score = 98.6 bits (244), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 48/74 (64%), Positives = 51/74 (68%)

Query: 1   LAQKELQKINMYKAPRDKLVCILNCCKVXXXXXXXXXXXXXENPPGADEFLPVLIYVTIK 60
           LAQKELQKINMYKAPRDKLVCILNCCKV             EN PGADEFLPVLIYVTIK
Sbjct: 138 LAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIASNENAPGADEFLPVLIYVTIK 197

Query: 61  VRSLNMNYLLSLLQ 74
                ++  L  +Q
Sbjct: 198 ANPPQLHSNLLYIQ 211


>AT3G19770.2 | Symbols: ATVPS9A, VPS9A | VPS9A; Rho
          guanyl-nucleotide exchange factor |
          chr3:6867742-6869114 FORWARD
          Length = 384

 Score = 96.7 bits (239), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 47/73 (64%), Positives = 50/73 (68%)

Query: 2  AQKELQKINMYKAPRDKLVCILNCCKVXXXXXXXXXXXXXENPPGADEFLPVLIYVTIKV 61
          AQKELQKINMYKAPRDKLVCILNCCKV             EN PGADEFLPVLIYVTIK 
Sbjct: 3  AQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIASNENAPGADEFLPVLIYVTIKA 62

Query: 62 RSLNMNYLLSLLQ 74
              ++  L  +Q
Sbjct: 63 NPPQLHSNLLYIQ 75


>AT5G09320.1 | Symbols: VPS9B | VPS9B | chr5:2889007-2892016 REVERSE
          Length = 712

 Score = 88.6 bits (218), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 41/60 (68%), Positives = 44/60 (73%)

Query: 1   LAQKELQKINMYKAPRDKLVCILNCCKVXXXXXXXXXXXXXENPPGADEFLPVLIYVTIK 60
           LAQKELQKINMY APRDKL+CIL CCKV             +N PGAD+FLPVLIYVTIK
Sbjct: 135 LAQKELQKINMYNAPRDKLMCILRCCKVINNLLLNASIASNQNEPGADQFLPVLIYVTIK 194