Jatropha Genome Database

JcCB0696091.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0696091.10 + phase: 0 /pseudo
         (153 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G20290.2 | Symbols: ATEHD1 | ATEHD1 (EPS15 HOMOLOGY DOMAIN 1)...    94   3e-20
AT3G20290.1 | Symbols: ATEHD1 | ATEHD1 (EPS15 HOMOLOGY DOMAIN 1)...    94   3e-20
AT4G05520.1 | Symbols: ATEHD2 | ATEHD2 (EPS15 HOMOLOGY DOMAIN 2)...    89   8e-19
AT4G05520.2 | Symbols: ATEHD2 | ATEHD2 (EPS15 HOMOLOGY DOMAIN 2)...    89   8e-19

>AT3G20290.2 | Symbols: ATEHD1 | ATEHD1 (EPS15 HOMOLOGY DOMAIN 1);
          GTP binding / GTPase/ calcium ion binding |
          chr3:7075057-7078655 REVERSE
          Length = 545

 Score = 94.0 bits (232), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 42/56 (75%), Positives = 46/56 (82%)

Query: 1  MEISSGPIGSCSKDNQKIYLEWFNFADSDGDGRITGNDAIKFFGMSNLSRQDLKQV 56
          MEI S   GSCSK+NQ IY EWF F+DSDGDGRITGNDAIKFF MSNL R +LKQ+
Sbjct: 1  MEIESVAAGSCSKENQMIYKEWFEFSDSDGDGRITGNDAIKFFTMSNLPRPELKQI 56


>AT3G20290.1 | Symbols: ATEHD1 | ATEHD1 (EPS15 HOMOLOGY DOMAIN 1);
          GTP binding / GTPase/ calcium ion binding |
          chr3:7075057-7078655 REVERSE
          Length = 545

 Score = 94.0 bits (232), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 42/56 (75%), Positives = 46/56 (82%)

Query: 1  MEISSGPIGSCSKDNQKIYLEWFNFADSDGDGRITGNDAIKFFGMSNLSRQDLKQV 56
          MEI S   GSCSK+NQ IY EWF F+DSDGDGRITGNDAIKFF MSNL R +LKQ+
Sbjct: 1  MEIESVAAGSCSKENQMIYKEWFEFSDSDGDGRITGNDAIKFFTMSNLPRPELKQI 56


>AT4G05520.1 | Symbols: ATEHD2 | ATEHD2 (EPS15 HOMOLOGY DOMAIN 2);
          GTP binding / GTPase/ calcium ion binding |
          chr4:2804522-2807833 FORWARD
          Length = 546

 Score = 89.4 bits (220), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 42/57 (73%), Positives = 47/57 (82%), Gaps = 1/57 (1%)

Query: 1  MEISSG-PIGSCSKDNQKIYLEWFNFADSDGDGRITGNDAIKFFGMSNLSRQDLKQV 56
          ME SS   IGSC K++QKIY EWFN ADSDGDGR++GNDA KFF MS LSRQ+LKQV
Sbjct: 1  METSSTISIGSCLKEHQKIYKEWFNIADSDGDGRVSGNDATKFFAMSKLSRQELKQV 57


>AT4G05520.2 | Symbols: ATEHD2 | ATEHD2 (EPS15 HOMOLOGY DOMAIN 2);
          GTP binding / GTPase/ calcium ion binding |
          chr4:2804522-2807833 FORWARD
          Length = 545

 Score = 89.4 bits (220), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 42/57 (73%), Positives = 47/57 (82%), Gaps = 1/57 (1%)

Query: 1  MEISSG-PIGSCSKDNQKIYLEWFNFADSDGDGRITGNDAIKFFGMSNLSRQDLKQV 56
          ME SS   IGSC K++QKIY EWFN ADSDGDGR++GNDA KFF MS LSRQ+LKQV
Sbjct: 1  METSSTISIGSCLKEHQKIYKEWFNIADSDGDGRVSGNDATKFFAMSKLSRQELKQV 57