Jatropha Genome Database

JcCB0695691.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0695691.10 - phase: 1 /TE/partial
         (117 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G67500.1 | Symbols: ATREV3 | ATREV3 (ARABIDOPSIS THALIANA REC...   115   8e-27

>AT1G67500.1 | Symbols: ATREV3 | ATREV3 (ARABIDOPSIS THALIANA
           RECOVERY PROTEIN 3); DNA binding / DNA-directed DNA
           polymerase | chr1:25287707-25296714 REVERSE
          Length = 1890

 Score =  115 bits (287), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 55/92 (59%), Positives = 69/92 (75%), Gaps = 1/92 (1%)

Query: 27  DSYTNAIALALEXXXXXXXXXXXXRQYVHGCSLVRARKFYGYNSSEELFVKIYL-YYPHD 85
           D  T A++L LE            RQ++H C +VRA+KFYGY+S+EE FVKIYL Y+P D
Sbjct: 86  DGSTLALSLELEKALKLKGNAASKRQHIHDCEIVRAKKFYGYHSTEEAFVKIYLSYHPPD 145

Query: 86  VSRAANLLLGGAVLDKSLKPHESHIPFILQFM 117
           V+RAA+LLL GAVL KSL+P+ESHIPFILQF+
Sbjct: 146 VARAASLLLAGAVLGKSLQPYESHIPFILQFL 177