Jatropha Genome Database

JcCB0695521.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0695521.10 - phase: 0 /pseudo/partial
         (154 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G21720.1 | Symbols:  | unknown protein | chr4:11542561-115442...    92   1e-19

>AT4G21720.1 | Symbols:  | unknown protein | chr4:11542561-11544274
           FORWARD
          Length = 139

 Score = 92.0 bits (227), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 40/58 (68%), Positives = 50/58 (86%)

Query: 58  LSECNEICYKDPVFKDQQWSAYIDRSPGAASYSEECFHACVAGCGYKFEIEPDKVDQV 115
           + +C+EICYKDPV KD+ W+A IDRSPG A YSEECFHACVAGCGYKF++E + V++V
Sbjct: 45  VGDCSEICYKDPVLKDRPWTAVIDRSPGDAKYSEECFHACVAGCGYKFDVEAEIVNKV 102