Jatropha Genome Database

JcCB0693201.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0693201.20 - phase: 1 /pseudo/partial
         (89 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G30390.1 | Symbols:  | unknown protein | chr4:14862224-148629...    65   1e-11

>AT4G30390.1 | Symbols:  | unknown protein |
          chr4:14862224-14862906 REVERSE
          Length = 95

 Score = 64.7 bits (156), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 29/43 (67%), Positives = 39/43 (90%)

Query: 43 RTLKAGKLNEKVLKLFMATGKDEVLSVIEALNIQYVLTPVLPT 85
          RTL+AGKLNE+VL+LFMA+G +EVLSVI+AL I+  ++P+LPT
Sbjct: 40 RTLEAGKLNERVLRLFMASGNEEVLSVIDALKIKINVSPILPT 82