Jatropha Genome Database

JcCB0693041.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0693041.10 + phase: 0 /pseudo/partial
         (271 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G58610.2 | Symbols:  | ketol-acid reductoisomerase | chr3:216...   325   2e-89
AT3G58610.1 | Symbols:  | ketol-acid reductoisomerase | chr3:216...   325   2e-89

>AT3G58610.2 | Symbols:  | ketol-acid reductoisomerase |
           chr3:21671561-21674639 FORWARD
          Length = 591

 Score =  325 bits (833), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 159/185 (85%), Positives = 166/185 (89%)

Query: 87  VRGGRDLFKLLPDAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDITVKIGLRKGSRS 146
           VRGGRDLFK LPDAFKGIKQIGVIGWGSQGPAQAQNLRDSL EAKSDI VKIGLRKGSRS
Sbjct: 102 VRGGRDLFKHLPDAFKGIKQIGVIGWGSQGPAQAQNLRDSLVEAKSDIVVKIGLRKGSRS 161

Query: 147 FAEARAAGFTEENGTSGDIWETISGSDLVMLLISDAAQADNYEKIFSYMKPNSIXXXXXX 206
           F EARAAGFTEE+GT GDIWETI+GSDLV+LLISDAAQADNYEKIFS+MKPNSI      
Sbjct: 162 FEEARAAGFTEESGTLGDIWETIAGSDLVLLLISDAAQADNYEKIFSHMKPNSILGLSHG 221

Query: 207 XXXXXXQSMGIDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRA 266
                 QS G+DFPKNISV+AVCPKGMGPSVRRLYVQGKEINGAGIN+SFAVHQDVDGRA
Sbjct: 222 FLLGHLQSSGLDFPKNISVVAVCPKGMGPSVRRLYVQGKEINGAGINASFAVHQDVDGRA 281

Query: 267 TDVAL 271
            DVAL
Sbjct: 282 ADVAL 286


>AT3G58610.1 | Symbols:  | ketol-acid reductoisomerase |
           chr3:21671561-21674639 FORWARD
          Length = 591

 Score =  325 bits (833), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 159/185 (85%), Positives = 166/185 (89%)

Query: 87  VRGGRDLFKLLPDAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDITVKIGLRKGSRS 146
           VRGGRDLFK LPDAFKGIKQIGVIGWGSQGPAQAQNLRDSL EAKSDI VKIGLRKGSRS
Sbjct: 102 VRGGRDLFKHLPDAFKGIKQIGVIGWGSQGPAQAQNLRDSLVEAKSDIVVKIGLRKGSRS 161

Query: 147 FAEARAAGFTEENGTSGDIWETISGSDLVMLLISDAAQADNYEKIFSYMKPNSIXXXXXX 206
           F EARAAGFTEE+GT GDIWETI+GSDLV+LLISDAAQADNYEKIFS+MKPNSI      
Sbjct: 162 FEEARAAGFTEESGTLGDIWETIAGSDLVLLLISDAAQADNYEKIFSHMKPNSILGLSHG 221

Query: 207 XXXXXXQSMGIDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRA 266
                 QS G+DFPKNISV+AVCPKGMGPSVRRLYVQGKEINGAGIN+SFAVHQDVDGRA
Sbjct: 222 FLLGHLQSSGLDFPKNISVVAVCPKGMGPSVRRLYVQGKEINGAGINASFAVHQDVDGRA 281

Query: 267 TDVAL 271
            DVAL
Sbjct: 282 ADVAL 286