Jatropha Genome Database

JcCB0691701.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0691701.10 + phase: 0 
         (57 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G62300.2 | Symbols:  | 40S ribosomal protein S20 (RPS20C) | c...    49   6e-07
AT5G62300.1 | Symbols:  | 40S ribosomal protein S20 (RPS20C) | c...    49   6e-07
AT3G45030.1 | Symbols:  | 40S ribosomal protein S20 (RPS20A) | c...    49   6e-07
AT3G47370.3 | Symbols:  | 40S ribosomal protein S20 (RPS20B) | c...    47   3e-06
AT3G47370.1 | Symbols:  | 40S ribosomal protein S20 (RPS20B) | c...    47   3e-06
AT3G47370.2 | Symbols:  | 40S ribosomal protein S20 (RPS20B) | c...    47   3e-06

>AT5G62300.2 | Symbols:  | 40S ribosomal protein S20 (RPS20C) |
          chr5:25021388-25022235 REVERSE
          Length = 124

 Score = 48.9 bits (115), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 24/25 (96%), Positives = 24/25 (96%)

Query: 15 LEEPQEQIHKIRITLSSKNVKNLEK 39
          LEEP EQIHKIRITLSSKNVKNLEK
Sbjct: 15 LEEPLEQIHKIRITLSSKNVKNLEK 39


>AT5G62300.1 | Symbols:  | 40S ribosomal protein S20 (RPS20C) |
          chr5:25021388-25022235 REVERSE
          Length = 124

 Score = 48.9 bits (115), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 24/25 (96%), Positives = 24/25 (96%)

Query: 15 LEEPQEQIHKIRITLSSKNVKNLEK 39
          LEEP EQIHKIRITLSSKNVKNLEK
Sbjct: 15 LEEPLEQIHKIRITLSSKNVKNLEK 39


>AT3G45030.1 | Symbols:  | 40S ribosomal protein S20 (RPS20A) |
          chr3:16471606-16472312 REVERSE
          Length = 124

 Score = 48.9 bits (115), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 24/25 (96%), Positives = 24/25 (96%)

Query: 15 LEEPQEQIHKIRITLSSKNVKNLEK 39
          LEEP EQIHKIRITLSSKNVKNLEK
Sbjct: 15 LEEPLEQIHKIRITLSSKNVKNLEK 39


>AT3G47370.3 | Symbols:  | 40S ribosomal protein S20 (RPS20B) |
          chr3:17453671-17454437 REVERSE
          Length = 122

 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/25 (92%), Positives = 23/25 (92%)

Query: 15 LEEPQEQIHKIRITLSSKNVKNLEK 39
          LE P EQIHKIRITLSSKNVKNLEK
Sbjct: 13 LEAPLEQIHKIRITLSSKNVKNLEK 37


>AT3G47370.1 | Symbols:  | 40S ribosomal protein S20 (RPS20B) |
          chr3:17453671-17454437 REVERSE
          Length = 122

 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/25 (92%), Positives = 23/25 (92%)

Query: 15 LEEPQEQIHKIRITLSSKNVKNLEK 39
          LE P EQIHKIRITLSSKNVKNLEK
Sbjct: 13 LEAPLEQIHKIRITLSSKNVKNLEK 37


>AT3G47370.2 | Symbols:  | 40S ribosomal protein S20 (RPS20B) |
          chr3:17453671-17454437 REVERSE
          Length = 122

 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/25 (92%), Positives = 23/25 (92%)

Query: 15 LEEPQEQIHKIRITLSSKNVKNLEK 39
          LE P EQIHKIRITLSSKNVKNLEK
Sbjct: 13 LEAPLEQIHKIRITLSSKNVKNLEK 37