Jatropha Genome Database

JcCB0691451.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0691451.10 - phase: 1 /TE/partial
         (129 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G42905.1 | Symbols:  | nucleic acid binding / ribonuclease H ...    59   8e-10

>AT5G42905.1 | Symbols:  | nucleic acid binding / ribonuclease H |
           chr5:17201414-17202323 REVERSE
          Length = 258

 Score = 58.9 bits (141), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 2/94 (2%)

Query: 2   IAWSFPTVPFVKLNTDGSLVGS--IACGGALIRYGPGRRIKGFVSKLGTCSVPEAELWAI 59
           I W  P V +VK+NTDG+  G+  +A  G ++R   G    GF   +G CS   AELW +
Sbjct: 138 IGWVLPCVGWVKVNTDGASRGNPGLASAGGVLRDCEGAWCGGFSLNIGRCSAQHAELWGV 197

Query: 60  LEGLKLANDMGISHLVIECDNETVVQLVNGGVAS 93
             GL  A +  +  + +E D+E +V  +  G++ 
Sbjct: 198 YYGLYFAWEKKVPRVELEVDSEAIVGFLKTGISD 231