Jatropha Genome Database

JcCB0682391.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0682391.10 - phase: 2 /partial
         (359 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G76490.1 | Symbols: HMG1, HMGR1 | HMG1 (HYDROXY METHYLGLUTARY...   531   e-151
AT2G17370.1 | Symbols: HMG2, HMGR2 | HMG2 (3-HYDROXY-3-METHYLGLU...   436   e-122

>AT1G76490.1 | Symbols: HMG1, HMGR1 | HMG1 (HYDROXY METHYLGLUTARYL
           COA REDUCTASE 1); hydroxymethylglutaryl-CoA reductase |
           chr1:28695801-28698206 FORWARD
          Length = 642

 Score =  531 bits (1368), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 261/340 (76%), Positives = 292/340 (85%), Gaps = 7/340 (2%)

Query: 1   IFFTLFFSVAYYLLHRWRDKIRNSTPLHIVTLSEIAAIVSLIASFIYLLGFFGIDFVQSF 60
           +FFTLFFSVAYYLLHRWRDKIR +TPLH+VT++E+ AI++LIASFIYLLGFFGIDFVQSF
Sbjct: 111 VFFTLFFSVAYYLLHRWRDKIRYNTPLHVVTITELGAIIALIASFIYLLGFFGIDFVQSF 170

Query: 61  IARASHDAWDLDDTDPAYLINEDHRLVTCXXXXXXXXXXXXXKLPPPDLIVAPLASEDDE 120
           I+RAS DAWDL       + ++DHRLVTC             KLP P+ IV     E+DE
Sbjct: 171 ISRASGDAWDLA----DTIDDDDHRLVTCSPPTPIVSVA---KLPNPEPIVTESLPEEDE 223

Query: 121 NIVKSVVNGTIPSYSLESKLGDCKRAATIRREALQRTTGRSLDGLPVDGFDYESILGQCC 180
            IVKSV++G IPSYSLES+LGDCKRAA+IRREALQR TGRS++GLP+DGFDYESILGQCC
Sbjct: 224 EIVKSVIDGVIPSYSLESRLGDCKRAASIRREALQRVTGRSIEGLPLDGFDYESILGQCC 283

Query: 181 EMPVGYVQIPVGIAGPLLLDGREYSVPMATTEGCLVASTNRGCKAIYLSGGATSVLLKDC 240
           EMPVGY+QIPVGIAGPLLLDG EYSVPMATTEGCLVASTNRGCKA+++SGGATS +LKD 
Sbjct: 284 EMPVGYIQIPVGIAGPLLLDGYEYSVPMATTEGCLVASTNRGCKAMFISGGATSTVLKDG 343

Query: 241 MTRAPVVRFESVTRAADLKFFLENPENFDTLAVVFNRSSRFARLQGVKCAIAGKNVYVRF 300
           MTRAPVVRF S  RA++LKFFLENPENFDTLAVVFNRSSRFARLQ VKC IAGKN YVRF
Sbjct: 344 MTRAPVVRFASARRASELKFFLENPENFDTLAVVFNRSSRFARLQSVKCTIAGKNAYVRF 403

Query: 301 SCSTGDAMGMNMVSKGVQNVLEFLKNDFPDMRLAGISGKF 340
            CSTGDAMGMNMVSKGVQNVLE+L +DFPDM + GISG F
Sbjct: 404 CCSTGDAMGMNMVSKGVQNVLEYLTDDFPDMDVIGISGNF 443


>AT2G17370.1 | Symbols: HMG2, HMGR2 | HMG2
           (3-HYDROXY-3-METHYLGLUTARYL-COA REDUCTASE 2);
           hydroxymethylglutaryl-CoA reductase |
           chr2:7550007-7551981 FORWARD
          Length = 562

 Score =  436 bits (1122), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 219/344 (63%), Positives = 264/344 (76%), Gaps = 24/344 (6%)

Query: 2   FFTLFFSVAYYLLHRWRDKIRNSTPLHIVTLSEIAAIVSLIASFIYLLGFFGIDFVQSFI 61
           F +LFF+  Y+LL RWR+KIRNSTPLH+V LSEI A++  +ASFIYLLGF GID +  F 
Sbjct: 44  FLSLFFATVYFLLSRWREKIRNSTPLHVVDLSEICALIGFVASFIYLLGFCGIDLI--FR 101

Query: 62  ARASHDAWDLDDTDPAYLINEDHRLVTCXXXXXXXXXXXXXKLP-PPDLIVAPLASE--- 117
           + +  D W  D   P       ++ + C              LP  P+ +  P  SE   
Sbjct: 102 SSSDDDVWVNDGMIPC------NQSLDCREV-----------LPIKPNSVDPPRESELDS 144

Query: 118 -DDENIVKSVVNGTIPSYSLESKLGDCKRAATIRREALQRTTGRSLDGLPVDGFDYESIL 176
            +DE IVK V++GTIPSYSLE+KLGDCKRAA IRREA+QR TG+SL GLP++GFDY SIL
Sbjct: 145 VEDEEIVKLVIDGTIPSYSLETKLGDCKRAAAIRREAVQRITGKSLTGLPLEGFDYNSIL 204

Query: 177 GQCCEMPVGYVQIPVGIAGPLLLDGREYSVPMATTEGCLVASTNRGCKAIYLSGGATSVL 236
           GQCCEMPVGYVQIPVGIAGPLLLDG EYSVPMATTEGCLVASTNRG KAI+LSGGA SVL
Sbjct: 205 GQCCEMPVGYVQIPVGIAGPLLLDGVEYSVPMATTEGCLVASTNRGFKAIHLSGGAFSVL 264

Query: 237 LKDCMTRAPVVRFESVTRAADLKFFLENPENFDTLAVVFNRSSRFARLQGVKCAIAGKNV 296
           +KD MTRAPVVRF S  RAA + F+L++P NF+ L+++FN+SSRFARLQ + C IAG+N+
Sbjct: 265 VKDAMTRAPVVRFPSARRAALVMFYLQDPSNFERLSLIFNKSSRFARLQSITCTIAGRNL 324

Query: 297 YVRFSCSTGDAMGMNMVSKGVQNVLEFLKNDFPDMRLAGISGKF 340
           Y RF+CSTGDAMGMNMVSKGVQNVL+F+K++FPDM + GISG +
Sbjct: 325 YPRFACSTGDAMGMNMVSKGVQNVLDFVKSEFPDMDVIGISGNY 368