Jatropha Genome Database

JcCB0678661.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0678661.10 - phase: 0 /pseudo/partial
         (335 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G19050.1 | Symbols: POK2 | POK2 (PHRAGMOPLAST ORIENTING KINES...   182   3e-46

>AT3G19050.1 | Symbols: POK2 | POK2 (PHRAGMOPLAST ORIENTING KINESIN
            2); ATP binding / microtubule motor |
            chr3:6578047-6590106 FORWARD
          Length = 2771

 Score =  182 bits (462), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 108/239 (45%), Positives = 158/239 (66%), Gaps = 14/239 (5%)

Query: 1    NAENGLLQHGLCESNTIIADLRENNSKSSKDLQMCRNLKGKLLADIKNSFDRILRKEEET 60
            N ENGLLQ GLC SN+ IA LR+NN +  ++L+M  NLKGKLL DIKN F+RI R EE T
Sbjct: 1668 NTENGLLQRGLCVSNSSIAGLRDNNLRLRRELEMFANLKGKLLTDIKNGFERISRNEEAT 1727

Query: 61   GDLSTKLTTFEKKIFDLQLQEESMLQRSNYMGSQLSILMQDLDFSNRNIAQSLIDQEKIL 120
              L+TKL++F++KI  LQ QE+ MLQRSN MGSQL IL++++D SN ++A++L++QE+ L
Sbjct: 1728 NLLTTKLSSFDQKISGLQYQEDLMLQRSNSMGSQLDILLKEIDLSNGDLAETLLEQERHL 1787

Query: 121  TEKEVLLNSQAELFLTDFCSKDIESLVLASQLEEMSLQKDEAEKENRSYASVLETLKEEM 180
             +K    +++ +L+L D CSKD+E LVLA   +E S      ++E   +  ++E LKE++
Sbjct: 1788 NQKNDFFDTEVQLYLMDLCSKDVELLVLAQTAKEYSSCLAVVDRELLDHHVIVEDLKEKL 1847

Query: 181  VLLMVDGELKEQVLLAKD----------TEVQD----LLSWLNQGHLRITEMNEVNRSL 225
            ++  V+GELK+Q L+             TE Q     L S L++   +I E++EVN+  
Sbjct: 1848 IVSQVEGELKDQCLVDNKLETVSVKEELTEAQSKIKVLSSDLDRSVQKIAEIDEVNKDF 1906