Jatropha Genome Database

JcCB0669741.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0669741.10 - phase: 0 /partial
         (92 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G22540.1 | Symbols: SVP, AGL22 | SVP (SHORT VEGETATIVE PHASE)...   117   1e-27
AT2G22540.2 | Symbols: SVP, AGL22 | SVP (SHORT VEGETATIVE PHASE)...   117   2e-27
AT4G24540.1 | Symbols: AGL24 | AGL24 (AGAMOUS-LIKE 24); protein ...   103   2e-23

>AT2G22540.1 | Symbols: SVP, AGL22 | SVP (SHORT VEGETATIVE PHASE);
           transcription factor/ translation repressor, nucleic
           acid binding | chr2:9580417-9583603 FORWARD
          Length = 240

 Score =  117 bits (294), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 56/81 (69%), Positives = 75/81 (92%), Gaps = 1/81 (1%)

Query: 1   MKDIIARYNLHSNNIDKLGRPSLELQL-ENSNHARLSKEVAEKTHQLRQMRGEDLRGLNV 59
           MK+++ R+NL S N++KL +PSLELQL ENS+HAR+SKE+A+K+H+LRQMRGE+L+GL++
Sbjct: 62  MKEVLERHNLQSKNLEKLDQPSLELQLVENSDHARMSKEIADKSHRLRQMRGEELQGLDI 121

Query: 60  EELQQLEKMLESGLTRVLETK 80
           EELQQLEK LE+GLTRV+ETK
Sbjct: 122 EELQQLEKALETGLTRVIETK 142


>AT2G22540.2 | Symbols: SVP, AGL22 | SVP (SHORT VEGETATIVE PHASE);
           transcription factor/ translation repressor, nucleic
           acid binding | chr2:9580417-9583603 FORWARD
          Length = 235

 Score =  117 bits (293), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 56/81 (69%), Positives = 75/81 (92%), Gaps = 1/81 (1%)

Query: 1   MKDIIARYNLHSNNIDKLGRPSLELQL-ENSNHARLSKEVAEKTHQLRQMRGEDLRGLNV 59
           MK+++ R+NL S N++KL +PSLELQL ENS+HAR+SKE+A+K+H+LRQMRGE+L+GL++
Sbjct: 57  MKEVLERHNLQSKNLEKLDQPSLELQLVENSDHARMSKEIADKSHRLRQMRGEELQGLDI 116

Query: 60  EELQQLEKMLESGLTRVLETK 80
           EELQQLEK LE+GLTRV+ETK
Sbjct: 117 EELQQLEKALETGLTRVIETK 137


>AT4G24540.1 | Symbols: AGL24 | AGL24 (AGAMOUS-LIKE 24); protein
           binding / protein heterodimerization/ protein
           homodimerization/ sequence-specific DNA binding /
           transcription factor | chr4:12671160-12673645 REVERSE
          Length = 220

 Score =  103 bits (258), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 53/81 (65%), Positives = 68/81 (83%), Gaps = 1/81 (1%)

Query: 1   MKDIIARYNLHSNNIDKL-GRPSLELQLENSNHARLSKEVAEKTHQLRQMRGEDLRGLNV 59
           M+DI+ RY+LH++NI+KL   PS  L+LEN N +RLSKEV +KT QLR++RGEDL GLN+
Sbjct: 62  MRDILGRYSLHASNINKLMDPPSTHLRLENCNLSRLSKEVEDKTKQLRKLRGEDLDGLNL 121

Query: 60  EELQQLEKMLESGLTRVLETK 80
           EELQ+LEK+LESGL+RV E K
Sbjct: 122 EELQRLEKLLESGLSRVSEKK 142