Jatropha Genome Database

JcCB0652571.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0652571.10 + phase: 1 /pseudo/partial
         (129 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G08200.1 | Symbols: AXS2 | AXS2 (UDP-D-APIOSE/UDP-D-XYLOSE SY...   224   9e-60
AT2G27860.1 | Symbols: AXS1 | AXS1 (UDP-D-apiose/UDP-D-xylose sy...   218   9e-58

>AT1G08200.1 | Symbols: AXS2 | AXS2 (UDP-D-APIOSE/UDP-D-XYLOSE
           SYNTHASE 2); UDP-glucuronate decarboxylase |
           chr1:2574259-2576609 REVERSE
          Length = 389

 Score =  224 bits (572), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 109/123 (88%), Positives = 113/123 (91%), Gaps = 2/123 (1%)

Query: 1   LDVYNDKI*HLLEPETLTWADRIQFHRLNIKHDSRLEGLIKMSDLTINLAAICTPADYNT 60
           LDVYNDKI HLLEP+T+ WA RIQFHR+NIKHDSRLEGLIKM+DLTINLAAICTPADYNT
Sbjct: 48  LDVYNDKIKHLLEPDTVQWAGRIQFHRINIKHDSRLEGLIKMADLTINLAAICTPADYNT 107

Query: 61  RPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQD--FSVLA 118
           RPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKD PLRQD  F VL 
Sbjct: 108 RPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDHPLRQDPEFYVLK 167

Query: 119 YSI 121
             I
Sbjct: 168 EDI 170


>AT2G27860.1 | Symbols: AXS1 | AXS1 (UDP-D-apiose/UDP-D-xylose
           synthase 1); NAD or NADH binding / UDP-glucuronate
           decarboxylase | chr2:11864684-11866843 REVERSE
          Length = 389

 Score =  218 bits (554), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 105/123 (85%), Positives = 111/123 (90%), Gaps = 2/123 (1%)

Query: 1   LDVYNDKI*HLLEPETLTWADRIQFHRLNIKHDSRLEGLIKMSDLTINLAAICTPADYNT 60
           LDVYNDKI HLLEP+T+ W+ RIQFHR+NIKHDSRLEGL+KM+DL INLAAICTPADYNT
Sbjct: 48  LDVYNDKIKHLLEPDTVEWSGRIQFHRINIKHDSRLEGLVKMADLIINLAAICTPADYNT 107

Query: 61  RPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQD--FSVLA 118
           RPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKD PLR D  F VL 
Sbjct: 108 RPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDHPLRDDPAFYVLK 167

Query: 119 YSI 121
             I
Sbjct: 168 EDI 170