Jatropha Genome Database
- JcCB0647611.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0647611.10 + phase: 0 /partial
(108 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G55270.1 | Symbols: | kelch repeat-containing F-box family p... 157 9e-40
AT1G30090.1 | Symbols: | kelch repeat-containing F-box family p... 59 9e-10
AT2G44130.1 | Symbols: | kelch repeat-containing F-box family p... 50 2e-07
AT3G43710.1 | Symbols: | kelch repeat-containing F-box family p... 49 5e-07
AT3G59940.1 | Symbols: | kelch repeat-containing F-box family p... 49 6e-07
AT1G22040.1 | Symbols: | kelch repeat-containing F-box family p... 49 7e-07
AT1G67480.2 | Symbols: | kelch repeat-containing F-box family p... 48 1e-06
AT1G67480.1 | Symbols: | kelch repeat-containing F-box family p... 48 1e-06
>AT1G55270.1 | Symbols: | kelch repeat-containing F-box family
protein | chr1:20618333-20619925 REVERSE
Length = 434
Score = 157 bits (398), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 75/108 (69%), Positives = 90/108 (83%), Gaps = 2/108 (1%)
Query: 1 VDTTACLCRVDAGLKTVASAKKYVPGSKLCLQPDIKPSIHPTRSKPSRGDRSRNQSPLLP 60
VD+ +C CRVD+GLKTV A+K+VPGSKLC+QPDI P+ H R K S+ +R+R Q PLLP
Sbjct: 23 VDSVSCYCRVDSGLKTVVEARKFVPGSKLCIQPDINPNAH--RRKNSKRERTRIQPPLLP 80
Query: 61 GLPDDLAIACLIRVPRIEHCKLRLVCKRWYRLLAGNFFYSHRRNLGIA 108
GLPDDLA+ACLIRVPR EH KLRLVCKRWYRL +GNFFYS R+ LG++
Sbjct: 81 GLPDDLAVACLIRVPRAEHRKLRLVCKRWYRLASGNFFYSQRKLLGMS 128
>AT1G30090.1 | Symbols: | kelch repeat-containing F-box family
protein | chr1:10559746-10560942 REVERSE
Length = 398
Score = 58.5 bits (140), Expect = 9e-10, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 27 SKLCLQPDIK--PSIHPTR-SKPSRGDRSRNQSPLLPGLPDDLAIACLIRVPRIEHCKLR 83
S++ L P + SI T + S + S PL+PGLPDD+A+ CL+RVP H +
Sbjct: 19 SQMTLSPKFRVAASIQSTLFDRSSELELSLRGEPLIPGLPDDVALNCLLRVPVQSHVSSK 78
Query: 84 LVCKRWYRLLAGN-FFYSHRRNLG 106
VCKRW+ L F++ R+ G
Sbjct: 79 SVCKRWHLLFGTKETFFAKRKEFG 102
>AT2G44130.1 | Symbols: | kelch repeat-containing F-box family
protein | chr2:18253731-18254960 FORWARD
Length = 409
Score = 50.4 bits (119), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/63 (41%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 44 SKPSRGDRSRNQSPLLPGLPDDLAIACLIRVPRIEHCKLRLVCKRWYRLLAGNFFYSHRR 103
SK GD + L+PGLP +LA+ CL+RVP +R VC+ W LL+ + F RR
Sbjct: 6 SKKKGGDFQQCHE-LIPGLPSELALECLVRVPFQFQSAMRSVCRSWRSLLSDSSFIQERR 64
Query: 104 NLG 106
G
Sbjct: 65 RCG 67
>AT3G43710.1 | Symbols: | kelch repeat-containing F-box family
protein | chr3:15605608-15606744 FORWARD
Length = 378
Score = 49.3 bits (116), Expect = 5e-07, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 41 PTRSKP---SRGDRSRNQSPLLPGLPDDLAIACLIRVPRIEHCKLRLVCKRWYRLLAGNF 97
P RSK S G+ R+ + + LPDDL ++CL RVPR+ + L LV KR+ L
Sbjct: 5 PKRSKTLLMSNGEERRSMTFGIEMLPDDLVLSCLARVPRMYYPILSLVSKRFRSFLTSTE 64
Query: 98 FYSHRRNLG 106
Y R LG
Sbjct: 65 LYQTRNLLG 73
>AT3G59940.1 | Symbols: | kelch repeat-containing F-box family
protein | chr3:22143009-22144265 FORWARD
Length = 418
Score = 48.9 bits (115), Expect = 6e-07, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 7/66 (10%)
Query: 43 RSKPSRGDRSRNQSPLLPGLPDDLAIACLIRVPRIEHCKLRLVCKRWYRLLAGNFFYSHR 102
+S RGD L+PGLP++LAI CL+RVP H ++ VC+ W +++ F R
Sbjct: 7 KSGEIRGD-------LIPGLPEELAIECLVRVPFQFHSSIKSVCRSWKCVISSRSFIKER 59
Query: 103 RNLGIA 108
G A
Sbjct: 60 IGFGKA 65
>AT1G22040.1 | Symbols: | kelch repeat-containing F-box family
protein | chr1:7768370-7769797 FORWARD
Length = 475
Score = 48.9 bits (115), Expect = 7e-07, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 37/64 (57%)
Query: 43 RSKPSRGDRSRNQSPLLPGLPDDLAIACLIRVPRIEHCKLRLVCKRWYRLLAGNFFYSHR 102
R K S + L+P LPD+L+I L R+PRI + +RLV +RW ++ + YS R
Sbjct: 28 RRKISSENDEEECCRLIPSLPDELSIQILARLPRICYSSVRLVSRRWRSAVSTSEVYSLR 87
Query: 103 RNLG 106
+ LG
Sbjct: 88 KELG 91
>AT1G67480.2 | Symbols: | kelch repeat-containing F-box family
protein | chr1:25277294-25278529 FORWARD
Length = 376
Score = 48.1 bits (113), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 33/61 (54%)
Query: 47 SRGDRSRNQSPLLPGLPDDLAIACLIRVPRIEHCKLRLVCKRWYRLLAGNFFYSHRRNLG 106
SR + PL+PGLPDD+A CL VPR + VCK+W ++ F + RR G
Sbjct: 28 SRLSENFMDDPLIPGLPDDVAKQCLALVPRARFPSMGSVCKKWRFVVQSKEFITVRRLAG 87
Query: 107 I 107
+
Sbjct: 88 M 88
>AT1G67480.1 | Symbols: | kelch repeat-containing F-box family
protein | chr1:25277294-25278529 FORWARD
Length = 376
Score = 48.1 bits (113), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 33/61 (54%)
Query: 47 SRGDRSRNQSPLLPGLPDDLAIACLIRVPRIEHCKLRLVCKRWYRLLAGNFFYSHRRNLG 106
SR + PL+PGLPDD+A CL VPR + VCK+W ++ F + RR G
Sbjct: 28 SRLSENFMDDPLIPGLPDDVAKQCLALVPRARFPSMGSVCKKWRFVVQSKEFITVRRLAG 87
Query: 107 I 107
+
Sbjct: 88 M 88