Jatropha Genome Database

JcCB0646891.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0646891.10 - phase: 0 /partial
         (72 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G39850.1 | Symbols:  | 40S ribosomal protein S9 (RPS9C) | chr...   144   1e-35
AT5G15200.2 | Symbols:  | 40S ribosomal protein S9 (RPS9B) | chr...   142   3e-35
AT5G15200.1 | Symbols:  | 40S ribosomal protein S9 (RPS9B) | chr...   142   4e-35

>AT5G39850.1 | Symbols:  | 40S ribosomal protein S9 (RPS9C) |
           chr5:15950053-15951171 FORWARD
          Length = 197

 Score =  144 bits (363), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 70/72 (97%), Positives = 72/72 (100%)

Query: 1   EKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIH 60
           EKNPRRIFEGEALLRRMNRYGLLDE+QNKLDYVLALTVENFLERRLQT+VFKSGMAKSIH
Sbjct: 66  EKNPRRIFEGEALLRRMNRYGLLDETQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIH 125

Query: 61  HARVLIRQRHIR 72
           HARVLIRQRHIR
Sbjct: 126 HARVLIRQRHIR 137


>AT5G15200.2 | Symbols:  | 40S ribosomal protein S9 (RPS9B) |
           chr5:4935602-4936334 REVERSE
          Length = 156

 Score =  142 bits (359), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 69/72 (95%), Positives = 72/72 (100%)

Query: 1   EKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIH 60
           EK+PRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQT+VFKSGMAKSIH
Sbjct: 66  EKSPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIH 125

Query: 61  HARVLIRQRHIR 72
           H+RVLIRQRHIR
Sbjct: 126 HSRVLIRQRHIR 137


>AT5G15200.1 | Symbols:  | 40S ribosomal protein S9 (RPS9B) |
           chr5:4935124-4936334 REVERSE
          Length = 198

 Score =  142 bits (358), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 69/72 (95%), Positives = 72/72 (100%)

Query: 1   EKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIH 60
           EK+PRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQT+VFKSGMAKSIH
Sbjct: 66  EKSPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIH 125

Query: 61  HARVLIRQRHIR 72
           H+RVLIRQRHIR
Sbjct: 126 HSRVLIRQRHIR 137